EY757962

Overview
NameEY757962
Unique NameEY757962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5465 contig Csv1_Contig5465:331..1189. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: AB2D_ARATH (ABC transporter D family member 2, chloroplastic OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.264e-53
Identity = 109/183 (59.56%), Postives = 136/183 (74.32%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSA-GLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFID-QESLY 560
            PQRPY VLGSLRQQL+YPTW+  V+  +    +  G  P L      E       KP+TDDL++ LE V LG+I  R   LD+ +EWSSVLSLGEQQRLAFARLLLS+P++ LLDESTSALDEANEA LY+QI++AGITYIS+GHRRTL  FH ++L+IST D  S++ NW++E +D Q+SLY
Sbjct:  519 PQRPYMVLGSLRQQLLYPTWSATVEETTPGGSNIDGSPPLLIREDGNE-------KPTTDDLMRTLEKVCLGHIADRFGGLDSIHEWSSVLSLGEQQRLAFARLLLSQPKLALLDESTSALDEANEAFLYQQIQSAGITYISIGHRRTLTKFHNKILQISTADPKSNERNWRIEDVDAQDSLY 694          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: Y182_SYNY3 (Uncharacterized ABC transporter ATP-binding protein sll0182 OS=Synechocystis sp. (strain PCC 6803) GN=sll0182 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.898e-26
Identity = 69/176 (39.20%), Postives = 97/176 (55.11%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFID 545
            PQRPY +LG+LR+QLIYP                       SAQ + +          D L++ L  V L  +  R   LD+   WSSVLSLGEQQR+A AR+ +++P+  +LDE+TSALD  NEA LY  +   G T+ISVGHR TL +FH++ L +       ++  W++  I+
Sbjct:  523 PQRPYMILGTLREQLIYP-----------------------SAQSIAD---------DDFLLETLNKVNLPDLAERFGGLDSLENWSSVLSLGEQQRIALARVFINQPRYAILDEATSALDVNNEAELYHALTDLGTTFISVGHRPTLRNFHRQCLEV------QAEGRWQISPIN 660          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: AB1D_ARATH (ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.523e-21
Identity = 68/181 (37.57%), Postives = 91/181 (50.28%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPST--DDLIKA-LEDVKLGYILPR-LNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQ 548
            PQRPYT LG+LR Q+IYP   EE +                 A KL   G  S++  +  D  +K  LE+V+L Y+L R +   D T  W  +LSLGEQQRL  ARL   +P+  +LDE T+A     E  LY      G+T+I+   R  L  FH   LR+        + NW+L  I+Q
Sbjct: 1174 PQRPYTCLGTLRDQIIYPLSKEEAEKR---------------AAKLYTSGESSTEAGSILDSHLKTILENVRLVYLLERDVGGWDATTNWEDILSLGEQQRLGMARLFFHRPKFGVLDECTNATSVDVEEQLYRVARDMGVTFITSSQRPALIPFHSLELRLI-----DGEGNWELRSIEQ 1334          

HSP 2 Score: 85.1149 bits (209), Expect = 5.444e-16
Identity = 58/179 (32.40%), Postives = 83/179 (46.37%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQES 554
            PQRPY  +G+LR QLIYP                     LTS Q+ E +       +   +++ L++V L Y+L R    +    W   LSLGEQQRL  ARL   KP+  +LDE TSA+    E     ++ A G + I++ HR  L  FH  VL +        +  W + +   +S
Sbjct:  522 PQRPYMAVGTLRDQLIYP---------------------LTSGQESELL-------TEIGMVELLKNVDLEYLLDRYQP-EKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSL------DGEGGWSVHYKRDDS 665          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD3_RAT (ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus GN=Abcd3 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 6.214e-20
Identity = 58/159 (36.48%), Postives = 82/159 (51.57%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA-LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 491
            PQRPY  LG+LR Q+IYP   E+ K                             K  +D ++K  L++V+LG+IL R    D+  +W  VLS GE+QR+A ARL   KPQ  +LDE TSA+    E ++Y      GIT  +V HR++L+  H+  L +
Sbjct:  509 PQRPYMTLGTLRDQVIYPDGKEDQK----------------------------KKGISDQVLKGYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 639          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD3_HUMAN (ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.808e-19
Identity = 57/160 (35.62%), Postives = 81/160 (50.62%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLI--KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 491
            PQRPY  LG+LR Q+IYP   E+ K                             +    DL+  + L++V+LG+IL R    D+  +W  VLS GE+QR+A ARL   KPQ  +LDE TSA+    E ++Y      GIT  +V HR++L+  H+  L +
Sbjct:  509 PQRPYMTLGTLRDQVIYPDGREDQK-----------------------------RKGISDLVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 639          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD4_MOUSE (ATP-binding cassette sub-family D member 4 OS=Mus musculus GN=Abcd4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.531e-18
Identity = 61/160 (38.12%), Postives = 85/160 (53.12%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS--SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 491
            PQ+P+   G+LR+Q+IYP   +E+ P S +A    +V FL  A                          L  ++ R   LD   +W+   VLS GE QRL+FARL   +P+  +LDE+TSAL E  E+ LY   +  G+T+ISVGHR +L  FH  VLR+
Sbjct:  460 PQKPFFTDGTLREQVIYPL--KEIYPDSGSADDERIVRFLELAG-------------------------LSSLVARTGGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEAESELYRIGQQLGMTFISVGHRPSLEKFHSWVLRL 592          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD3_MOUSE (ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.531e-18
Identity = 56/159 (35.22%), Postives = 80/159 (50.31%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA-LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 491
            PQRPY  LG+LR Q+IYP   E+ K                             +  +D ++K  L++V+LG+IL R    D+  +W  VLS GE+QR+A ARL   KPQ  +LDE TSA+    E ++Y      GIT  +V H + L+  H+  L +
Sbjct:  509 PQRPYMTLGTLRDQVIYPDGKEDQK----------------------------KRGISDQVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHTKCLWKHHEYYLHM 639          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD2_HUMAN (ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.999e-18
Identity = 61/185 (32.97%), Postives = 88/185 (47.57%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD-DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLYNLS 569
            PQRPY  LGSLR Q+IYP                            ++V     K  TD DL + L +V L +I+ R    D   +W  VLS GE+QR+  AR+   KP+  LLDE TSA+    E  +++  + AGI+ +S+ HR +L+ +H  +L      Q   +  W+ E +D      LS
Sbjct:  547 PQRPYMSLGSLRDQVIYP----------------------------DSVDDMHDKGYTDQDLERILHNVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAKGAGISLLSITHRPSLWKYHTHLL------QFDGEGGWRFEQLDTAIRLTLS 697          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD4_HUMAN (ATP-binding cassette sub-family D member 4 OS=Homo sapiens GN=ABCD4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.611e-18
Identity = 60/160 (37.50%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS--SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 491
            PQ+P+   G+LR+Q+IYP   +EV P S +A    ++ FL  A                          L  ++ R   LD   +W+   VLS GE QRL+FARL   +P+  +LDE+TSAL E  E+ LY   +  G+T+ISVGHR++L  FH  VL++
Sbjct:  460 PQKPFFTDGTLREQVIYPL--KEVYPDSGSADDERILRFLELAG-------------------------LSNLVARTEGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQLGMTFISVGHRQSLEKFHSLVLKL 592          
BLAST of EY757962 vs. ExPASy Swiss-Prot
Match: ABCD2_MOUSE (ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.816e-18
Identity = 60/185 (32.43%), Postives = 87/185 (47.03%), Query Frame = 3
Query:   18 PQRPYTVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD-DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLYNLS 569
            PQRPY  LGSLR Q+IYP   ++++                             K  TD DL + L  V L +I+ R    D   +W  VLS GE+QR+  AR+   KP+  LLDE TSA+    E  +++    AGI+ +S+ HR +L+ +H  +L      Q   +  W+ E +D      LS
Sbjct:  548 PQRPYMSLGSLRDQVIYPDSADDMR----------------------------EKGYTDQDLERILHSVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITHRPSLWKYHTHLL------QFDGEGGWRFEQLDTAIRLTLS 698          
The following BLAST results are available for this feature:
BLAST of EY757962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
AB2D_ARATH3.264e-5359.56ABC transporter D family member 2, chloroplastic O... [more]
Y182_SYNY39.898e-2639.20Uncharacterized ABC transporter ATP-binding protei... [more]
AB1D_ARATH2.523e-2137.57ABC transporter D family member 1 OS=Arabidopsis t... [more]
ABCD3_RAT6.214e-2036.48ATP-binding cassette sub-family D member 3 OS=Ratt... [more]
ABCD3_HUMAN1.808e-1935.63ATP-binding cassette sub-family D member 3 OS=Homo... [more]
ABCD4_MOUSE1.531e-1838.13ATP-binding cassette sub-family D member 4 OS=Mus ... [more]
ABCD3_MOUSE1.531e-1835.22ATP-binding cassette sub-family D member 3 OS=Mus ... [more]
ABCD2_HUMAN1.999e-1832.97ATP-binding cassette sub-family D member 2 OS=Homo... [more]
ABCD4_HUMAN2.611e-1837.50ATP-binding cassette sub-family D member 4 OS=Homo... [more]
ABCD2_MOUSE5.816e-1832.43ATP-binding cassette sub-family D member 2 OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-029-F02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757962 ID=EY757962; Name=EY757962; organism=Citrus sinensis; type=EST; length=859bp
TTCGTCGACCCACGCGTCCGCAGAGACCATATACGGTTTTAGGTAGTCTT
CGTCAACAATTGATTTATCCTACGTGGACTGAAGAAGTGAAACCGGCGTC
TGATGCTGCGAAATCCGCTGGTTTAGTGCCATTCTTGACATCAGCACAAA
AATTGGAAAATGTGGGAAGAAAGTCTAGCAAGCCCTCAACAGATGATCTA
ATTAAGGCTCTAGAGGATGTCAAACTTGGCTATATCTTGCCTCGTCTCAA
TAGCTTGGACACAACATATGAGTGGTCCAGTGTTCTGTCCCTTGGGGAGC
AGCAGCGCCTTGCTTTTGCACGTTTGTTGCTTTCAAAACCACAGATAGTT
CTATTGGATGAGTCTACCAGTGCTTTAGACGAAGCCAACGAGGCTCATTT
ATATGAGCAAATTGAAGCAGCAGGCATAACATATATTAGTGTCGGCCATC
GGCGAACCTTGTATGATTTCCACAAAAGGGTGTTGCGCATATCCACAGTG
GATCAGAACAGTAGTCAAAGTAATTGGAAGCTTGAGTTTATTGATCAAGA
ATCCTTGTATAATCTGTCAAGGCGATAGTAACTGCCCATGTAGTCAATGA
TTCTCTTTCATCANGTGATTAATACCTAGTCATATTGGAAAGATGAAGCA
AGACGNTGGAGGGCTTTCTTGNTAGAACCGTACATTGAAAATGGGCTATT
GTATGACCCAAATCAGATTTTGCCCATTTCTGTATATTTTCCACTCAGTT
TCCGGGCAGCAATTAATACCCCTGTNCTGCTTTCATGTAAGAACCGTACA
TTGAAAATAGCTATTGTAATGACTCAAATAAGATTTTGCCCAAAAAAAAA
AAAAAAAAA
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