EY757938

Overview
NameEY757938
Unique NameEY757938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4591 contig Csv1_Contig4591:322..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.187e-47
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 274
            EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK+NEAEAVETAKEWTRLYASGA
Sbjct:   63 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA 153          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 7.099e-47
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 274
            EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK+NEAEAV+TAKEWTRLYASGA
Sbjct:   63 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASGA 153          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.412e-41
Identity = 76/88 (86.36%), Postives = 85/88 (96.59%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            EYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:   61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.412e-41
Identity = 76/88 (86.36%), Postives = 85/88 (96.59%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            EYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:   61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.412e-41
Identity = 76/88 (86.36%), Postives = 85/88 (96.59%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            EYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:   61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.412e-41
Identity = 76/88 (86.36%), Postives = 85/88 (96.59%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            EYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:   61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 9.929e-41
Identity = 75/88 (85.23%), Postives = 85/88 (96.59%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            EYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WK+NEA+A+ETA+ WTRLYA
Sbjct:   61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYA 148          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.297e-40
Identity = 76/88 (86.36%), Postives = 84/88 (95.45%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            +YPM+APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+HWKTNE EA+  A+EWTRLYA
Sbjct:   61 DYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.694e-40
Identity = 75/88 (85.23%), Postives = 84/88 (95.45%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            EYPMAAPKVRF+TKIYHPN+DK GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:   61 EYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of EY757938 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.704e-38
Identity = 72/88 (81.82%), Postives = 82/88 (93.18%), Query Frame = 2
Query:    2 EYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 265
            EYPMAAPKVRF+TKIYHPN+DKL RI LDILKDKWSPALQIRTVLLSIQALL+APNPDDPL+ ++ + WKTNEA+A+ETA+ WTRLYA
Sbjct:   62 EYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYA 149          
The following BLAST results are available for this feature:
BLAST of EY757938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
UBC36_ARATH3.187e-4798.90Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH7.099e-4797.80Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_PONAB3.412e-4186.36Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE3.412e-4186.36Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN3.412e-4186.36Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN3.412e-4186.36Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_RAT9.929e-4185.23Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_DICDI1.297e-4086.36Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_MACFA1.694e-4085.23Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UE2NL_HUMAN2.704e-3881.82Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-029-C12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757938 ID=EY757938; Name=EY757938; organism=Citrus sinensis; type=EST; length=476bp
AGAATATCCTATGGCTGCTCCAAAGGTCCGATTTCTTACCAAGATATATC
ATCCTAACATTGATAAGCTTGGAAGGATTTGTCTTGATATTCTGAAAGAC
AAGTGGAGTCCAGCTCTCCAGATTCGGACTGTACTGTTGAGCATTCAAGC
ACTTCTGAGTGCTCCTAACCCCGATGATCCTCTCTCCGAGAACATTGCCA
AACACTGGAAAACAAATGAGGCCGAAGCAGTTGAAACAGCGAAGGAATGG
ACACGTTTATATGCCAGTGGTGCTTGATGACATGGTGGAAAATATCACTT
CATTCAAATAACAATTGTGCAATGTATGCTATTCACTGTCTGTTTAAAAT
GGAAAATTTGGAAGAATTGAATTGATGTTTGAACATTCGGAGTTTGACAT
TCTGAAAGCTTCCATCTTACCGCACATGTCAATTATTTTCTTCTTGTGGA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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