EY757937

Overview
NameEY757937
Unique NameEY757937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12266 contig Csv1_Contig12266:359..1125. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757937 vs. ExPASy Swiss-Prot
Match: PRP8_MOUSE (Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.994e-63
Identity = 105/153 (68.63%), Postives = 128/153 (83.66%), Query Frame = 2
Query:   23 NELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 481
            NE PQLSPQD+T+HA+I+ +N  WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQMLLSDRFLGF+MVP    WNYNFMGV+H  +MKY ++L  P+E+YHE HRP+HFL F+ L+EGE+   DRED ++
Sbjct: 2183 NESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335          
BLAST of EY757937 vs. ExPASy Swiss-Prot
Match: PRP8_HUMAN (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.994e-63
Identity = 105/153 (68.63%), Postives = 128/153 (83.66%), Query Frame = 2
Query:   23 NELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 481
            NE PQLSPQD+T+HA+I+ +N  WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQMLLSDRFLGF+MVP    WNYNFMGV+H  +MKY ++L  P+E+YHE HRP+HFL F+ L+EGE+   DRED ++
Sbjct: 2183 NESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335          
BLAST of EY757937 vs. ExPASy Swiss-Prot
Match: PRP8_CAEEL (Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.836e-58
Identity = 100/154 (64.94%), Postives = 121/154 (78.57%), Query Frame = 2
Query:   23 NELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEG-EMAEGDREDTFS 481
            NELPQLSPQD+T+HA++L +N  WDGEK +++TCSFTPGS SLTAYKLTPSGYEWG+ N D G+NP GY+PTHYEKVQMLLSDRFLG++MVP NG WNYNF G + + +MK+ V L  P+EYYHEDHRP HF  F   ++       DRED F+
Sbjct: 2176 NELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGTGSADREDAFA 2329          
BLAST of EY757937 vs. ExPASy Swiss-Prot
Match: PRP8_DICDI (Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.547e-46
Identity = 84/137 (61.31%), Postives = 105/137 (76.64%), Query Frame = 2
Query:   26 ELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNL 436
            ELPQLSPQD+ +H++I+ +NK WDGEK +I++ S     C+LTAY LTPSG+EWG+ NKD+  N  GY P  YEKVQMLLSDRFLGFYMVPD G WNYNFMGVKH+ +M YG+KL  P+ +Y E HRP HF  ++ +
Sbjct: 2174 ELPQLSPQDVITHSKIMSDNKSWDGEKTVIISVSVA-WPCTLTAYHLTPSGFEWGKNNKDS-LNYQGYQPQFYEKVQMLLSDRFLGFYMVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESHRPAHFQNWTQM 2308          
BLAST of EY757937 vs. ExPASy Swiss-Prot
Match: SPP42_SCHPO (Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe GN=spp42 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.851e-33
Identity = 69/154 (44.81%), Postives = 96/154 (62.34%), Query Frame = 2
Query:   23 NELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPH-GYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 481
            +ELP LS  D+T+HA+IL ++ +WD  K + LT S+ PGS SL AY ++  G EWG  N D  S+   GY P+  EK Q+LLSDR  GF++VP+ G WNYNF G   +  M Y +KL  P  ++  +HRPTH + ++ LE  +  E D  D F+
Sbjct: 2211 SELPYLSSVDVTTHAKILSSHPEWD-TKAVTLTVSYIPGSISLAAYTVSKEGIEWGSKNMDINSDEAIGYEPSMAEKCQLLLSDRIQGFFLVPEEGVWNYNFNGASFSPKMTYSLKLDVPLPFFALEHRPTHVISYTELETNDRLEEDMPDAFA 2363          
BLAST of EY757937 vs. ExPASy Swiss-Prot
Match: PRP8_YEAST (Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae GN=PRP8 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 62/161 (38.51%), Postives = 89/161 (55.28%), Query Frame = 2
Query:    2 WVDPRVRNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSN-PHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 481
            W+  +   EL  ++  ++ +H+++  + K+     CI ++   TPGS SL+AY LT  GY+WG  NKD  +    G+ PT     Q+LLSDR  G +++P    WNY FMG        Y  K G P E+Y+E HRP HFL+FS L   E  E ++ D FS
Sbjct: 2258 WIHTQTE-ELKFMAASEVATHSKLFADKKR----DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSELAGDEELEAEQIDVFS 2413          
The following BLAST results are available for this feature:
BLAST of EY757937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PRP8_MOUSE4.994e-6368.63Pre-mRNA-processing-splicing factor 8 OS=Mus muscu... [more]
PRP8_HUMAN4.994e-6368.63Pre-mRNA-processing-splicing factor 8 OS=Homo sapi... [more]
PRP8_CAEEL2.836e-5864.94Pre-mRNA-splicing factor 8 homolog OS=Caenorhabdit... [more]
PRP8_DICDI5.547e-4661.31Pre-mRNA-processing-splicing factor 8 homolog OS=D... [more]
SPP42_SCHPO1.851e-3344.81Pre-mRNA-splicing factor spp42 OS=Schizosaccharomy... [more]
PRP8_YEAST9.837e-2738.51Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevi... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-029-C11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757937 ID=EY757937; Name=EY757937; organism=Citrus sinensis; type=EST; length=767bp
TTGGGTCGACCCACGCGTCCGAAATGAGCTTCCACAGCTATCGCCTCAGG
ATCTCACTTCTCATGCGCGGATTCTAGAAAACAATAAACAATGGGATGGA
GAGAAATGCATTATCTTGACTTGTAGTTTCACCCCAGGTTCCTGCTCGTT
AACTGCATACAAGCTTACTCCAAGTGGTTATGAGTGGGGAAGAGTTAACA
AGGACACAGGAAGCAATCCCCATGGATATCTTCCAACTCACTATGAGAAG
GTCCAAATGCTTCTGAGTGACCGGTTCCTTGGTTTCTACATGGTTCCCGA
CAACGGTCCATGGAACTATAACTTCATGGGAGTGAAGCATACAGTGAGCA
TGAAATATGGTGTCAAGCTTGGGACTCCTCGAGAATACTACCATGAGGAC
CATAGGCCAACTCATTTCTTGGAGTTCAGCAACTTGGAGGAGGGTGAAAT
GGCAGAGGGAGATCGTGAGGATACATTCTCATAAGCCTATTGATGCTATT
TTGAGGTCGTAATCTTTCTTGTGAATTAAATTGTAGCATTTGCTTGGAAA
CTGCTAGACTGGAGTAGATTTACTTTACCAACATGGGGATGAAGCAGTGC
CCCATTTTTGGTCGTTATAAAAACGTGTTTACTTATGGGACAGTTGTAAT
TCTCTGTAGAATGATAGTTTGAGGTGTAAATATATACGGTAACGAGGTTT
CATAAATTTTCTGTTGATGCTGGATCTGAAAGTCCTCTATGTGGTATTAA
NGAGTGGCCTTGCAGAT
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