EY757936

Overview
NameEY757936
Unique NameEY757936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13456 contig Csv1_Contig13456:1..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY757936 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 8.019e-27
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 2 
Query:    8 PIDYSRPAGEMNMVDWFKGMVASRRGEELVDPLIEVQPSPRALKRALLVCLRCIDMDAHKRPKMGQIVHMLEADDFPFRSEHRPHRE 268
            P+DYSRP GE N+VDW K MV +RR EE+VDP I   PS +ALKR LLV LRC+D DA+KRPKMG I+HMLEA+D  +R E R  R+
Sbjct:  355 PVDYSRPQGETNLVDWLKSMVGNRRSEEVVDPKIPEPPSSKALKRVLLVALRCVDPDANKRPKMGHIIHMLEAEDLLYRDERRTTRD 441
[Close]
BLAST of EY757936 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.803e-25
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 2 
Query:    8 PIDYSRPAGEMNMVDWFKGMVASRRGEELVDPLIEVQPSPRALKRALLVCLRCIDMDAHKRPKMGQIVHMLEADDFPFRSEHRPHREK 271
            P+DY RPA E+N+V+W K MV +RR EE+VDP +E +PS  ALKRALLV LRC+D +A KRP+M Q+  MLE+D+ PF  E R  R K
Sbjct:  384 PVDYGRPANEVNLVEWLKMMVGTRRAEEVVDPRLEPRPSKSALKRALLVSLRCVDPEAEKRPRMSQVARMLESDEHPFHKERRNKRSK 471
The following BLAST results are available for this feature:
BLAST of EY757936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1154_ARATH8.019e-2763.22Probable serine/threonine-protein kinase At1g01540... [more]
Y2296_ARATH9.803e-2557.95Probable receptor-like protein kinase At2g42960 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-029-C10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757936 ID=EY757936; Name=EY757936; organism=Citrus sinensis; type=EST; length=528bp
CACGCGTCCGATTGATTATTCACGACCAGCTGGAGAGATGAACATGGTTG
ACTGGTTTAAAGGAATGGTAGCGAGCCGCCGTGGAGAAGAGCTTGTGGAT
CCTTTAATTGAAGTTCAGCCATCTCCAAGAGCATTAAAAAGGGCATTGCT
GGTTTGTCTTCGTTGTATAGATATGGATGCACATAAGCGACCAAAGATGG
GGCAGATTGTTCATATGCTTGAGGCAGATGACTTTCCTTTTCGTTCTGAA
CACCGACCACATCGAGAGAAAGATCCTCATACCTTGAACGAAGCTGTGCC
CGACAAAGTTCCATATTCAACGAAGCACGCTGCGGGTGGAAATGTAGAGA
GATCAAGATGGAGATAATTGTTGTCATTTTAAGCTTTGGATGTGCATATA
TTGCTTCACTTTCGTTTCTTTTTTGGTTTTTTAATGCCTTTTGTCGATAT
ATTGCAGCATTTATCTTCCATCTAAACGAGCCTTGTAAATATGTACTACT
TTAATATTTGAATATCGCAATATTTTGT
back to top