EY757933

Overview
NameEY757933
Unique NameEY757933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY757933_ssr843 microsatellite EY757933_ssr843:843..854. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY757933 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.150e-39
Identity = 112/247 (45.34%), Postives = 133/247 (53.85%), Query Frame = 1 
Query:   13 KKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRL----XXXXXXXXXNLNFRTDHTV----NLPQG-VPQGV-----AGSISQFGSGFA---------GLAEMVQI---XXXXXXXXXXXXXXXXXXXHQFQ----GFHKSM---AGATTNSKSANXXXXXXXXXXXXXXYNSDSTHENKQLKPVAVGPMSATALLQKAAQMGSTRKHNN 654
            KKH+SRKHG            YAVQSDWKAH+KTCGTREYKCDCGTLFSRKDSFITHRAFCDAL EE  R+             NLNF  +  V    NLP G V +GV       +ISQFG GF          GL+EMVQ+                      HQFQ      + S+   + +T+   SA+              ++S S  ENKQ KP++  PMSATALLQKAAQMGSTR +++
Sbjct:  147 KKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLNFGNESNVMNNPNLPHGFVHRGVHHPDINAAISQFGLGFGHDLSAMHAQGLSEMVQMASTGNHHLFPSSSSSLPDFSGHHQFQIPMTSTNPSLTLSSSSTSQQTSASLQHQTLKDSSFSPLFSSSS--ENKQNKPLS--PMSATALLQKAAQMGSTRSNSS 389
[Close]
BLAST of EY757933 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.530e-26
Identity = 53/71 (74.65%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   13 KKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRL 225
            KKHF RKHG            YAVQSDWKAHSKTCGTREY+CDCGT+FSR+DSFITHRAFCDALAEE+ RL
Sbjct:  134 KKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARL 204
[Close]
BLAST of EY757933 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.481e-25
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   13 KKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRL 225
            KKHF RKHG            YAVQSDWKAHSKTCGTREY+CDCGT+FSR+DSFITHRAFCDALAEE+ ++
Sbjct:  130 KKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKI 200
The following BLAST results are available for this feature:
BLAST of EY757933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
JKD_ARATH5.150e-3945.34Zinc finger protein JACKDAW OS=Arabidopsis thalian... [more]
MGP_ARATH6.530e-2674.65Zinc finger protein MAGPIE OS=Arabidopsis thaliana... [more]
NUC_ARATH2.481e-2571.83Zinc finger protein NUTCRACKER OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-029-C05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757933 ID=EY757933; Name=EY757933; organism=Citrus sinensis; type=EST; length=925bp
CCACGCGTCCGAAAGAAGCATTTTAGCAGAAAACATGGAGAAAAGAAATG
GAAGTGTGAGAAATGTTCAAAGAAATATGCAGTTCAATCTGACTGGAAAG
CTCACTCCAAGACTTGTGGCACCCGAGAGTATAAGTGTGATTGTGGCACT
TTATTTTCCAGAAAAGATAGCTTCATTACGCACAGAGCTTTTTGTGACGC
CTTAGCCGAAGAGAGCACAAGACTCGCTTCATCAGTAGTTGCTGCTGCTT
CAAATCTGAATTTCAGAACTGATCATACCGTAAATCTGCCTCAGGGTGTA
CCCCAAGGTGTTGCTGGCAGCATTTCTCAATTTGGATCCGGCTTTGCAGG
TTTGGCTGAGATGGTGCAAATCGGTTCAGTCAGTAATAATCTGTTTGGCT
CGTCATCCTCAAATATGGGTAATTTTGGTCATCAGTTTCAAGGCTTTCAC
AAGAGCATGGCTGGTGCTACTACAAATTCAAAAAGTGCAAATCTCACATT
ATTATCGGAATTAAAAGAAGAAACTTCTTGTCTTTATAATTCTGATAGTA
CTCATGAAAACAAGCAATTAAAACCAGTGGCTGTCGGGCCAATGTCAGCG
ACGGCGCTCTTGCAGAAAGCAGCTCAAATGGGTTCTACAAGAAAGCATAA
TAACCCATTACTTNCATTTTCNGAAACGGCAGCGGCTTCAATAATGTGAT
GAGCTCTTCTTCATCCTCGTCGAATGCACAAGCTACAACAATATACCCTC
TCTCACATACTAATCTCTCGGGATCAGCAGNTACTTTAGCCACAGTGATG
GAGGTATGGGTAGTTCAAATTTGAGACCCTGAACACAACACACAGCAGCA
GCAGTGGAACAGGGATACCCTTATCAGCTGATGTGATGCAACAGGAGGAG
ATCACAATGGACACAACACAGTTCT
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