EY757848

Overview
NameEY757848
Unique NameEY757848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757848 vs. ExPASy Swiss-Prot
Match: TMM49_XENTR (Transmembrane protein 49 OS=Xenopus tropicalis GN=tmem49 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.861e-22
Identity = 57/156 (36.54%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  117 QHLNFLTILVLASVPNPLFDLAGIMCGQFGVPFWKFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIENELIWVLSLVPGFAPVLPSLVAKLHTMRAKYLKPQQPSSHIKVKKWDFSFASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDKEIA 584
            Q + FL IL  AS+PNPLFDLAGI CG F VPFW FF ATLIGKAIIK HIQ +F+I   +  +++    +++ ++ ++P   P L     +    + K L  ++ S   + + W    +  +  +V +M+  F + I+   AQ Y K+ Q ++++
Sbjct:  253 QKVGFLGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKLFVIITFSKHIVE----QMVSLIGVIPSIGPSLQKPFQEYLEAQRKKLHHKEDSGAPQSENW---LSWAFEKLVIIMVFYFILSIINSMAQSYAKRVQQRKLS 401          
BLAST of EY757848 vs. ExPASy Swiss-Prot
Match: TMM49_XENLA (Transmembrane protein 49 OS=Xenopus laevis GN=tmem49 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.430e-22
Identity = 58/156 (37.18%), Postives = 89/156 (57.05%), Query Frame = 3
Query:  117 QHLNFLTILVLASVPNPLFDLAGIMCGQFGVPFWKFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIENELIWVLSLVPGFAPVLPSLVAKLHTMRAKYLKPQQPSSHIKVKKWDFSFASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDKEIA 584
            Q + FL IL  AS+PNPLFDLAGI CG F VPFW FF ATLIGKAIIK HIQ +F+I   +  +++    +++ ++ ++P   P L     +    + K L  +  S   + + W    +  +  +V +M+  F + I+   AQ Y K+ Q K+++
Sbjct:  253 QKVGFLGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKLFVIITFSKHIVE----QMVSLIGVIPSIGPSLQKPFQEYLEAQRKKLHHKGDSGTPQSENW---LSWAFEKLVIIMVFYFILSIINSMAQSYAKRVQQKKLS 401          
BLAST of EY757848 vs. ExPASy Swiss-Prot
Match: TMM49_DICDI (Transmembrane protein 49 homolog OS=Dictyostelium discoideum GN=tmem49 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.509e-21
Identity = 60/157 (38.22%), Postives = 86/157 (54.78%), Query Frame = 3
Query:  120 HLNFLTILVLASVPNPLFDLAGIMCGQFGVPFWKFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIENELIWVLSLVPGFAPVLPSLVAKLHTMRAKYLKPQQPSSHIKVKKWDFSFASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDKEIAAL 590
            +L F  IL  AS+PNPLFDLAGI CG F VPFWKFF AT IGKA++K HIQ  F+I   N +        L  V+S +    P L +   K+  +  K  + Q+ +S +            W+ +++LM+  F + IV  + Q YL ++ +K+I  L
Sbjct:  243 NLGFFGILAFASIPNPLFDLAGITCGHFLVPFWKFFGATFIGKAVVKAHIQACFVILAFNME-------TLTMVISFIEDKIPFLKN---KIQPILEK--ERQKLNSTVSANSPKSLVGLAWDCVLFLMISYFLMSIVDSSVQEYLIEKDNKKIELL 387          
BLAST of EY757848 vs. ExPASy Swiss-Prot
Match: TMM49_DANRE (Transmembrane protein 49 OS=Danio rerio GN=tmem49 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.818e-21
Identity = 59/161 (36.65%), Postives = 88/161 (54.66%), Query Frame = 3
Query:  117 QHLNFLTILVLASVPNPLFDLAGIMCGQFGVPFWKFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIENELIWVLSLVPGFAPVLPSLVAKLHTMRAKYLKPQQPSSHIKV-------KKWDFSFASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDKE 578
            Q + F  IL  AS+PNPLFDLAGI CG F +PFW FF ATLIGKAIIK HIQ +F+I   +  +++    +++ ++ ++PG         A L     +YL+ Q+   H          + W    + V+  +V +M+  F + I+   AQ Y K+ Q K+
Sbjct:  253 QKVGFFGILACASIPNPLFDLAGITCGHFLIPFWTFFGATLIGKAIIKMHIQKLFVIITFSKHIVE----QMVSLIGVIPGVG-------ASLQKPFREYLEAQRTKLHNPAGDGAAAGESW---LSWVFEKVVLVMVCYFILSIINSMAQSYAKRLQQKK 399          
BLAST of EY757848 vs. ExPASy Swiss-Prot
Match: TMM49_PONAB (Transmembrane protein 49 OS=Pongo abelii GN=TMEM49 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.021e-20
Identity = 59/157 (37.58%), Postives = 86/157 (54.78%), Query Frame = 3
Query:  117 QHLNFLTILVLASVPNPLFDLAGIMCGQFGVPFWKFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIENELIWVLSLVPGFAPVLPSLVAKLHTMRAKYLKPQQPSSHIK----VKKWDFSFASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDK 575
            Q + F  IL  AS+PNPLFDLAGI CG F VPFW FF ATLIGKAIIK HIQ +F+I   +  +++    +++  +  VPG  P        L     +YL+ Q+   H K      + +   + ++  +V +M+  F + I+   AQ Y K+ Q +
Sbjct:  253 QKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVE----QMVAFIGAVPGIGP-------SLQKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQR 398          
BLAST of EY757848 vs. ExPASy Swiss-Prot
Match: TMM49_HUMAN (Transmembrane protein 49 OS=Homo sapiens GN=TMEM49 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.021e-20
Identity = 59/157 (37.58%), Postives = 86/157 (54.78%), Query Frame = 3
Query:  117 QHLNFLTILVLASVPNPLFDLAGIMCGQFGVPFWKFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIENELIWVLSLVPGFAPVLPSLVAKLHTMRAKYLKPQQPSSHIK----VKKWDFSFASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDK 575
            Q + F  IL  AS+PNPLFDLAGI CG F VPFW FF ATLIGKAIIK HIQ +F+I   +  +++    +++  +  VPG  P        L     +YL+ Q+   H K      + +   + ++  +V +M+  F + I+   AQ Y K+ Q +
Sbjct:  253 QKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVE----QMVAFIGAVPGIGP-------SLQKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQR 398          
BLAST of EY757848 vs. ExPASy Swiss-Prot
Match: TMM49_RAT (Transmembrane protein 49 OS=Rattus norvegicus GN=Tmem49 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.334e-20
Identity = 56/153 (36.60%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  117 QHLNFLTILVLASVPNPLFDLAGIMCGQFGVPFWKFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIENELIWVLSLVPGFAPVLPSLVAKLHTMRAKYLKPQQPSSHIKVKKWDFSFASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDK 575
            Q + F  IL  AS+PNPLFDLAGI CG F VPFW FF ATLIGKAIIK HIQ +F+I   +  +++    +++  +  VPG  P L     +    + + L  +  +   + + W    +  +  +V  M+  F + I+   AQ Y K+ Q +
Sbjct:  253 QKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIVTFSKHIVE----QMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHRSEAGTAQGENW---LSWTFEKLVVAMVCYFILSIINSMAQSYAKRIQQR 398          
BLAST of EY757848 vs. ExPASy Swiss-Prot
Match: TMM49_MOUSE (Transmembrane protein 49 OS=Mus musculus GN=Tmem49 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.334e-20
Identity = 56/153 (36.60%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  117 QHLNFLTILVLASVPNPLFDLAGIMCGQFGVPFWKFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIENELIWVLSLVPGFAPVLPSLVAKLHTMRAKYLKPQQPSSHIKVKKWDFSFASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDK 575
            Q + F  IL  AS+PNPLFDLAGI CG F VPFW FF ATLIGKAIIK HIQ +F+I   +  +++    +++  +  VPG  P L     +    + + L  +  +   + + W    + ++  +V  M+  F + I+   AQ Y K+ Q +
Sbjct:  253 QKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIVTFSKHIVE----QMVTFIGAVPGIGPSLQKPFQEYLEAQRQKLHHRSEAGTPQGENW---LSWMFEKLVVAMVCYFVLSIINSMAQNYAKRIQQR 398          
BLAST of EY757848 vs. ExPASy Swiss-Prot
Match: TMM49_BOVIN (Transmembrane protein 49 OS=Bos taurus GN=TMEM49 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.971e-20
Identity = 56/153 (36.60%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  117 QHLNFLTILVLASVPNPLFDLAGIMCGQFGVPFWKFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIENELIWVLSLVPGFAPVLPSLVAKLHTMRAKYLKPQQPSSHIKVKKWDFSFASVWNTIVWLMLMNFFVKIVTDTAQRYLKKQQDK 575
            Q + F  IL  AS+PNPLFDLAGI CG F VPFW FF ATLIGKAIIK HIQ +F+I   +  +++    +++  +  VPG  P L     +    + + L  +      + + W    + ++  +V +M+  F + I+   AQ Y K+ Q +
Sbjct:  253 QKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKLFVIVAFSKHIVE----QMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHRSEMGTPQGENW---LSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQR 398          
The following BLAST results are available for this feature:
BLAST of EY757848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TMM49_XENTR1.861e-2236.54Transmembrane protein 49 OS=Xenopus tropicalis GN=... [more]
TMM49_XENLA2.430e-2237.18Transmembrane protein 49 OS=Xenopus laevis GN=tmem... [more]
TMM49_DICDI3.509e-2138.22Transmembrane protein 49 homolog OS=Dictyostelium ... [more]
TMM49_DANRE7.818e-2136.65Transmembrane protein 49 OS=Danio rerio GN=tmem49 ... [more]
TMM49_PONAB1.021e-2037.58Transmembrane protein 49 OS=Pongo abelii GN=TMEM49... [more]
TMM49_HUMAN1.021e-2037.58Transmembrane protein 49 OS=Homo sapiens GN=TMEM49... [more]
TMM49_RAT1.334e-2036.60Transmembrane protein 49 OS=Rattus norvegicus GN=T... [more]
TMM49_MOUSE1.334e-2036.60Transmembrane protein 49 OS=Mus musculus GN=Tmem49... [more]
TMM49_BOVIN2.971e-2036.60Transmembrane protein 49 OS=Bos taurus GN=TMEM49 P... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-028-C02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757848 ID=EY757848; Name=EY757848; organism=Citrus sinensis; type=EST; length=890bp
CCACGCGTCCGAGCAGATTATATGCAATGGATGAATTTGATGATTCGTCA
ACAGAGAGTGATGGGGTCGTAGCTGCCCGACTGAAAAAAATCAAACGCTG
GTTCTTTACACACTCCCAACACTTGAACTTCCTGACGATTTTAGTGCTTG
CTTCGGTGCCAAATCCTCTCTTTGATCTTGCTGGCATTATGTGTGGACAG
TTTGGGGTTCCATTTTGGAAGTTTTTTCTTGCTACATTGATTGGAAAGGC
AATTATTAAAACTCACATACAGACAGTTTTTATCATCTCTGTATGCAACA
ATCAGCTGCTTGACTGGATAGAGAATGAGTTGATTTGGGTGCTCAGCCTT
GTACCCGGTTTTGCTCCTGTCTTGCCCAGCCTCGTAGCTAAGCTTCATAC
AATGAGAGCAAAGTATCTGAAACCCCAGCAGCCTTCCTCGCATATCAAGG
TGAAGAAGTGGGATTTCTCGTTTGCTTCAGTCTGGAACACCATCGTGTGG
CTTATGCTCATGAACTTCTTCGTAAAGATCGTGACTGATACTGCTCAAAG
ATATCTGAAGAAACAGCAGGATAAGGAGATAGCGGCATTGACTAACAATT
CGTCTGCTTCAAGACAATCAAAGTAGGCATTTCACCGAGTGCCTTGATAT
ACATTCGACATTATATCGGCTTTTTCTACTTTTCCTTTAGNTGTTATAAA
GAAGTATTGAGGGTCAAAGTGATGGCTTCACGTCATTCAGCCACCACCGG
TCACCCGAAAATCGCATCCTTCAGCAAGTCCTTATTCAGAGGCTGGATAG
AAATAGGAGGATCCCCGGGCTTAACAAAGGATACGGGTTATTTATCCGGG
GTATGTGTGGGGTAAAAAAAAAAAAAAAAAAAANAANAAA
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