EY757847

Overview
NameEY757847
Unique NameEY757847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length435
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12425 contig Csv1_Contig12425:383..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757847 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.722e-37
Identity = 64/81 (79.01%), Postives = 75/81 (92.59%), Query Frame = 1
Query:   13 EFELQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 255
            EFEL+ G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISF+ AKPPGV
Sbjct:  100 EFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of EY757847 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 9.026e-34
Identity = 61/79 (77.22%), Postives = 71/79 (89.87%), Query Frame = 1
Query:   13 EFELQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 249
            EFEL+ G+VYREHH SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   98 EFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY757847 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 9.026e-34
Identity = 61/79 (77.22%), Postives = 72/79 (91.14%), Query Frame = 1
Query:   13 EFELQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 249
            EFEL+ G+VYREH +SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   98 EFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY757847 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.540e-33
Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 1
Query:   13 EFELQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 252
            EFE ++G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  100 EFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY757847 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.626e-33
Identity = 61/80 (76.25%), Postives = 71/80 (88.75%), Query Frame = 1
Query:   13 EFELQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 252
            EFEL+ G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:  103 EFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY757847 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.626e-33
Identity = 61/80 (76.25%), Postives = 71/80 (88.75%), Query Frame = 1
Query:   13 EFELQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 252
            EFEL+ G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISF+A KP G
Sbjct:  103 EFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY757847 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.430e-33
Identity = 60/79 (75.95%), Postives = 71/79 (89.87%), Query Frame = 1
Query:   13 EFELQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 249
            EFEL+ G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++ +RIIGFDN RQVQCISF+A KPP
Sbjct:   98 EFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY757847 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.430e-33
Identity = 61/81 (75.31%), Postives = 72/81 (88.89%), Query Frame = 1
Query:   13 EFELQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 255
            EFEL+ G+VYREH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISF+A KPPGV
Sbjct:  102 EFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of EY757847 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.430e-33
Identity = 60/79 (75.95%), Postives = 71/79 (89.87%), Query Frame = 1
Query:   13 EFELQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 249
            EFEL+ G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   98 EFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY757847 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.430e-33
Identity = 60/79 (75.95%), Postives = 71/79 (89.87%), Query Frame = 1
Query:   13 EFELQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 249
            EFEL+ G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   98 EFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of EY757847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
RBS_LACSA8.722e-3779.01Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA9.026e-3477.22Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1A_ARATH9.026e-3477.22Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS8_NICPL1.540e-3377.50Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS_PYRPY2.626e-3376.25Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP2.626e-3376.25Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_RAPSA3.430e-3375.95Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE3.430e-3375.31Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_BRANA3.430e-3375.95Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS1_BRANA3.430e-3375.95Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-028-C01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757847 ID=EY757847; Name=EY757847; organism=Citrus sinensis; type=EST; length=435bp
CCACGCGTCCGGGAATTCGAGTTGCAGAAAGGATGGGTGTACCGTGAGCA
CCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGC
TGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGG
GAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGA
CAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAG
GCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTG
ATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTC
GGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTT
TTTGGTTTTCTCCCAAAAAAAAAAAAAAAAAAAAA
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