EY757844

Overview
NameEY757844
Unique NameEY757844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY757844_ssr12 microsatellite EY757844_ssr12:12..35. BLAST: Citrus ESTs to Prunus persica proteins V1
EY757844_ssr36 microsatellite EY757844_ssr36:36..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2345 contig Csv1_Contig2345:64..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757844 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.973e-67
Identity = 122/152 (80.26%), Postives = 130/152 (85.53%), Query Frame = 3
Query:  123 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 578
            MVKAVAVLG +EGVKGT+ F QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHGAPED+NRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of EY757844 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 7.498e-67
Identity = 120/152 (78.95%), Postives = 130/152 (85.53%), Query Frame = 3
Query:  123 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 578
            MVKAVAVL  +EGV GT+ F+QEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAP DDNRHA            TA+FT+ D QIPL+G NS+IGRAVVVH DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of EY757844 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 9.793e-67
Identity = 121/152 (79.61%), Postives = 129/152 (84.87%), Query Frame = 3
Query:  123 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 578
            MVKAVAVLG +EGVKGT+ F QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAG EHGAPED+ RHA            T    +VD+QIPLSG NSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of EY757844 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 9.793e-67
Identity = 117/152 (76.97%), Postives = 131/152 (86.18%), Query Frame = 3
Query:  123 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 578
            MVKAV VL  +EGV GTV F QEG GPTTV+G++SGL+PG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED+ RHA            TATFT++D+QIPL+GPNSI+GRAVVVHADPDDLG+GGHELSK+TGNAGGRVACG+IGLQG
Sbjct:    1 MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGLQG 152          
BLAST of EY757844 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.670e-66
Identity = 120/152 (78.95%), Postives = 129/152 (84.87%), Query Frame = 3
Query:  123 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 578
            MVKAVAVLG ++GVKGT+ F QEGDGPT V+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHGAPED+NRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of EY757844 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.849e-66
Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 3
Query:  123 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 578
            M KAV VL  +EGV GTV FAQEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NP GKEHGAPEDD RHA            TATFT++D+QIPLSGPNSI+GRAVVVHA+PDDLG+GGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MGKAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of EY757844 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.083e-65
Identity = 117/152 (76.97%), Postives = 129/152 (84.87%), Query Frame = 3
Query:  123 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 578
            MVK VAVL  +EGV GT+ F QEGDGPTTV+G++SGLKPGPHGFHVHALGDTTNGC+STGPHFNPAGKEHGAP+D+ RHA            TA FT+VD QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSK+TGN GGRVACGI GLQG
Sbjct:    1 MVKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGLQG 152          
BLAST of EY757844 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.083e-65
Identity = 119/152 (78.29%), Postives = 129/152 (84.87%), Query Frame = 3
Query:  123 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 578
            MVKAV VLG +E VKGT+ F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of EY757844 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.083e-65
Identity = 119/152 (78.29%), Postives = 129/152 (84.87%), Query Frame = 3
Query:  123 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 578
            MVKAV VLG +E VKGT+ F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of EY757844 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.412e-65
Identity = 118/151 (78.15%), Postives = 130/151 (86.09%), Query Frame = 3
Query:  123 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 575
            MVKAVAVL G+EGV+GTV FAQEG+GPTT++GSLSGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED NRHA            T  FTV D+QIPL+G NS++GRAVVVHAD DDLGKGGHELSK+TGNAGGR+ACG+IGLQ
Sbjct:    1 MVKAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLACGVIGLQ 151          
The following BLAST results are available for this feature:
BLAST of EY757844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC4_MAIZE1.973e-6780.26Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_IPOBA7.498e-6778.95Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_ANACO9.793e-6779.61Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC1_MESCR9.793e-6776.97Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC5_MAIZE1.670e-6678.95Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC_SPIOL2.849e-6678.29Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_PAUKA1.083e-6576.97Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC1_ORYSJ1.083e-6578.29Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI1.083e-6578.29Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_ZANAE2.412e-6578.15Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-028-B08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757844 ID=EY757844; Name=EY757844; organism=Citrus sinensis; type=EST; length=772bp
CCACGCGTCCGCACACACACACACACACACACACACTCTCTCTCTCTCTC
ACTCCCTCTTTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGG
TGTTCTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTG
GAACTGAGGGTGTCAAGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGT
CCAACAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGG
ATTCCATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTG
GACCCCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGAT
AATCGTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTAC
TGCTACTTTTACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATT
CCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGC
AAGGGCGGTCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGT
AGCTTGCGGCATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACA
ATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATAT
GCTTGAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAATCTANNT
ACTTGNTGGGTATCCTGGATGGTTTTCTTATAATCTCATCTTACATTTTA
AAAAAAAAAAAAAAAAAAAAAA
back to top