EY757734

Overview
NameEY757734
Unique NameEY757734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6276 contig Csv1_Contig6276:396..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757734 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 4.807e-39
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 3
Query:   24 KEQCLALGTRLRSKYKIMYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 254
            KEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN+RSIGKNVSPIEVKFTGKQVYDL
Sbjct:  131 KEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207          
BLAST of EY757734 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.499e-37
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 3
Query:   24 KEQCLALGTRLRSKYKIMYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 254
            KEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQN+RSIGKN S IEVKFTGKQVYD+
Sbjct:  132 KEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208          
BLAST of EY757734 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 3
Query:   24 KEQCLALGTRLRSKYKIMYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 254
            KEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:  128 KEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204          
BLAST of EY757734 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.309e-36
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 3
Query:   24 KEQCLALGTRLRSKYKIMYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 254
            KEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGREGVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:  132 KEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208          
BLAST of EY757734 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.710e-36
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 3
Query:   24 KEQCLALGTRLRSKYKIMYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 254
            KEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GR+GVGQN+RSIGKN SPIEVKFTGKQVYDL
Sbjct:  128 KEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204          
BLAST of EY757734 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.809e-36
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 3
Query:   24 KEQCLALGTRLRSKYKIMYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 254
            KEQCLALGTRLRSKYKI YQFYRVFP+GEVQYLHPKDGVYPEKVNPGR+GVG N RSIGKNVSPIEVKFTGKQ YDL
Sbjct:  136 KEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212          
BLAST of EY757734 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.224e-35
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 3
Query:   24 KEQCLALGTRLRSKYKIMYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 254
            KEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVN GR+GVGQN+RSIGKNVSPIEVKFTGK  +D+
Sbjct:  129 KEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205          
BLAST of EY757734 vs. ExPASy Swiss-Prot
Match: PSAD_PORPU (Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.160e-25
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 3
Query:   24 KEQCLALGTRLRSKYKIM-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 251
            KEQCLALGT+L+ K+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR  +     SIGKNV+PI VKFT K  YD
Sbjct:   65 KEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASINSVDHSIGKNVNPINVKFTNKATYD 141          
BLAST of EY757734 vs. ExPASy Swiss-Prot
Match: PSAD_PORYE (Photosystem I reaction center subunit II OS=Porphyra yezoensis GN=psaD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.961e-24
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 3
Query:   24 KEQCLALGTRLRSKYKIM-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 251
            KEQCLALGT+L+SK+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR  V     SIG+N++P++VKF  K  YD
Sbjct:   65 KEQCLALGTQLKSKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNTGRASVNSVDHSIGQNINPVDVKFMNKATYD 141          
BLAST of EY757734 vs. ExPASy Swiss-Prot
Match: PSAD_GUITH (Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.705e-24
Identity = 50/77 (64.94%), Postives = 63/77 (81.82%), Query Frame = 3
Query:   24 KEQCLALGTRLRSKYKIM-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 251
            KEQCLALGT++++ +KI  Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR GVG    SIGKN++P ++KFT K   D
Sbjct:   65 KEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIGKNLNPAQIKFTNKSFCD 141          
The following BLAST results are available for this feature:
BLAST of EY757734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_CUCSA4.807e-3997.40Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC4.499e-3793.51Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH1.309e-3693.51Photosystem I reaction center subunit II-2, chloro... [more]
PSAD1_ARATH1.309e-3693.51Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_NICSY1.710e-3692.21Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL3.809e-3692.21Photosystem I reaction center subunit II, chloropl... [more]
PSAD_HORVU3.224e-3588.31Photosystem I reaction center subunit II, chloropl... [more]
PSAD_PORPU5.160e-2570.13Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_PORYE1.961e-2467.53Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_GUITH5.705e-2464.94Photosystem I reaction center subunit II OS=Guilla... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-026-H08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757734 ID=EY757734; Name=EY757734; organism=Citrus sinensis; type=EST; length=458bp
CCACGCGTCCGCCCACGCTTCCCAAAGAGCAGTGCTTGGCTCTGGGGACA
AGGCTGAGGTCCAAGTACAAGATTATGTACCAGTTTTACCGAGTGTTTCC
CAATGGAGAGGTTCAGTATTTGCATCCCAAGGATGGTGTTTATCCTGAGA
AAGTGAACCCCGGAAGGGAAGGAGTTGGGCAGAATTACAGGTCTATTGGT
AAGAATGTGAGTCCTATTGAGGTCAAGTTTACAGGGAAGCAAGTGTATGA
TCTGTAAATTTAAATTGTAAGCTGCTAAGCTGACGGGCCTCGGATGATCT
GTTGATTAATTGTTGTGATCATTTACTTGTTTGTATTCGTGTTTTCTTTT
CCTTAAAAATATTGTATGAAAGCAAGACTTGATCGCTGAAACTATTTTAT
ACATGCAATATCTCTTTTTAGTTTANAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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