EY757713

Overview
NameEY757713
Unique NameEY757713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:321..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY757713 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    5 ASGGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 187
            A  GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757713 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    5 ASGGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 187
            A  GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757713 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    5 ASGGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 187
            A  GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757713 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    5 ASGGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 187
            A  GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757713 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    5 ASGGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 187
            A  GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757713 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    5 ASGGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 187
            A  GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757713 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    5 ASGGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 187
            A  GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757713 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    5 ASGGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 187
            A  GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757713 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    5 ASGGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 187
            A  GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of EY757713 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    5 ASGGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 187
            A  GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   39 ARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of EY757713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SILLA5.848e-2696.72Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA5.848e-2696.72Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE5.848e-2696.72Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE5.848e-2696.72Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR5.848e-2696.72Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL5.848e-2696.72Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ5.848e-2696.72Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH5.848e-2696.72Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT5.848e-2696.72Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT5.848e-2696.72Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-026-F06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757713 ID=EY757713; Name=EY757713; organism=Citrus sinensis; type=EST; length=450bp
CCACGCGTCCGGAGGTGGAGTCAAGCGTATCAGTGGCTTGATCTACGAGG
AGACACGTGGCGTCCTGAAGATATTCTTGGAGAACGTCATCCGTGACGCC
GTGACCTACACTGAGCACGCCAGGAGAAAGACCGTGACCGCGATGGACGT
CGTTTACGCTCTCAAGAGGCAGGGCAGGACTCTTTATGGATTTGGGGGTT
AATTGTCTTAGGGTTCTGGAATTGAATGTTAATAGATCTTGACTCTAGAT
CTTGATCTGGTAGATGGGGCTCTTAGTAGTTTGTTATTAGGTTGCTGCTT
TGTAATTCTATCAAGTTAAATCTTATCTTTATATTTGAGGCAATATAGAA
CTGTTTTCTTTGAAGGATTGTTCCGTGGTTCTGGATTTTATTTATTAAAC
TATTTGATGTGCTGTTTGGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top