EY757695

Overview
NameEY757695
Unique NameEY757695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY757695 vs. ExPASy Swiss-Prot
Match: SIN3_ARATH (Paired amphipathic helix protein Sin3 OS=Arabidopsis thaliana GN=SIN3 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.615e-37
Identity = 86/152 (56.58%), Postives = 106/152 (69.74%), Query Frame = 1 
Query:   13 KSSNPGRFVDVVYHENARVLLLDENIYRIECS-SIPTRLSIQVMDNGHDKPEVTAVSMDPNFAAYLYHDFLSV-PDKKEKPGIFLKRNKRKFVGNDEFSATCRAMEGLQVVNGLECKITCNSSKVSYVLDTEDFLFRKKKRTFHQNGPCHNQ 462
            KS  P    D VY++N RVLL DENIYRIEC  S P +LSIQ+M NG DKP+VT+VS+DP FAAYL++DFLS+ P+ +E   I+L RNKRK    DE      + + +++ NGLECKI C SSKVSYVL+TED L R KKR   +   CHNQ
Sbjct: 1191 KSRRPETIFDAVYYDNTRVLLPDENIYRIECRLSTPAKLSIQLMCNGLDKPDVTSVSIDPTFAAYLHNDFLSIQPNAREDRRIYLNRNKRKVCREDE---QLYSTDEVKIKNGLECKIACGSSKVSYVLETEDLLVRVKKR---RKTLCHNQ 1336
The following BLAST results are available for this feature:
BLAST of EY757695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SIN3_ARATH2.615e-3756.58Paired amphipathic helix protein Sin3 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-026-D12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757695 ID=EY757695; Name=EY757695; organism=Citrus sinensis; type=EST; length=878bp
CCACGCGTCCGGAAATCGAGTAACCCTGGAAGATTTGTTGATGTAGTTTA
TCATGAAAATGCTCGCGTTCTACTTCTTGATGAGAATATATATCGTATTG
AATGTTCATCCATACCCACCCGCCTATCTATTCAGGTTATGGACAATGGA
CATGATAAGCCTGAAGTGACAGCTGTTTCCATGGATCCTAATTTTGCAGC
GTACCTGTACCATGACTTCCTTTCAGTTCCTGACAAGAAAGAGAAGCCTG
GAATATTCTTGAAGAGGAATAAACGCAAATTTGTAGGCAATGATGAGTTT
TCGGCAACATGCCGGGCCATGGAAGGGCTTCAAGTTGTCAATGGTTTGGA
GTGTAAGATAACTTGCAATTCATCCAAGGTCTCATATGTTTTGGATACTG
AAGATTTTTTGTTTCGTAAAAAGAAAAGAACTTTCCATCAGAATGGCCCG
TGCCACAACCAGGCAAGGGCTTCAAATGGTTATCCAATTAGAAGATTACA
ACGGTTTCAAAGATGGCTTTCTGGCTCGTAATGTGCCCTGCAGTAGATAT
GCCTTTAGCACACATTAGGTACACTGGTGCTGGAACTGGAAAGTTTGACA
GCGCTGCAAGTGGAAAAGCTTTTGCAGGATTCATCTTGCATTCTCTCATA
TTTCTGTCTCACAAATCCAATAAAGAATCTGAGGGGAGGGAATATGGCTC
GGAGGATTGTAGCATAATGTAAGTTTGTGGCATTTTGTGCCACCCATGTA
AATAGAGGTAATATGTGATGTAAACCTGAGATATATGTTCATTCCATTCA
TCTATATTTTTTTTTTCTTCCAAANACACAAAAAAATAGAAGTCTAACAA
AACAATAAAAAAAGGGCGGCGCCTCTAC
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