EY757681

Overview
NameEY757681
Unique NameEY757681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4290 contig Csv1_Contig4290:10..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757681 vs. ExPASy Swiss-Prot
Match: PSRP6_ARATH (50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.243e-16
Identity = 45/85 (52.94%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  100 MSISSFFGSQIVVVP------NLSSKKLGVEGKCNVGLVIENSSRPQKKATAHHMKTRPRKTQPWDVNRKPTVYXXXXXXXXDWS 336
            MS+S+ FG+ IV V            KLG  G   +G+VIE SSRPQKK+TAHH KTRP+KTQPWD+ RKPTVY        +WS
Sbjct:    1 MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGG--GLGMVIECSSRPQKKSTAHHRKTRPKKTQPWDIKRKPTVYAPLPPLPAEWS 83          
BLAST of EY757681 vs. ExPASy Swiss-Prot
Match: PSRP6_SPIOL (50S ribosomal protein 6, chloroplastic OS=Spinacia oleracea GN=PSRP6 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.831e-14
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  100 MSISSFFGSQIVVVPNL--------SSKKL--GVEGKCNVGLV-IENSSRPQKKATAHHMKTRPRKTQPWDVNRKPTVYXXXXXXXXDWSLV 342
            MS+S+ FG+++V +P++         + KL     G C  G++ IE SSRPQKK TAHHMKTRP+KT  WD+ R P VY        +W++V
Sbjct:    1 MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHMKTRPKKTARWDIKRGPAVYPPLPPLPAEWTIV 92          
BLAST of EY757681 vs. ExPASy Swiss-Prot
Match: PSRP6_PEA (50S ribosomal protein 6, chloroplastic OS=Pisum sativum GN=PSRP6 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  103 SISSFFGSQIVVVPNLSSKKLGVEGK----CNVGLVIENSSRPQKKATAHHMKTRPRKTQPWDVNRKPTVYXXXXXXXXDWSLV 342
            S+SS FG  + + PN S +   +  +    C  GL+IE SSRPQKK+TAHHMKTRPRK++  D NRKPTVY        D+++V
Sbjct:    3 SVSSIFGCGVSMAPNSSLRNKAIRTERRSACG-GLLIECSSRPQKKSTAHHMKTRPRKSRLSDRNRKPTVYAPLPPLPPDFTIV 85          
The following BLAST results are available for this feature:
BLAST of EY757681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSRP6_ARATH3.243e-1652.9450S ribosomal protein 6, chloroplastic OS=Arabidop... [more]
PSRP6_SPIOL8.831e-1443.4850S ribosomal protein 6, chloroplastic OS=Spinacia... [more]
PSRP6_PEA4.383e-1348.8150S ribosomal protein 6, chloroplastic OS=Pisum sa... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-026-C10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757681 ID=EY757681; Name=EY757681; organism=Citrus sinensis; type=EST; length=634bp
CCACGCGTCCGCTCAATCGATAGCTGGAGGTGGACAAGAAATCCGTCACT
CTGCAAGAGCAAACGCAGCGCAGACCAAAGCGAAGGAAACAGAAGAGGAA
TGTCGATCTCATCATTTTTCGGTTCGCAAATTGTAGTGGTTCCCAATTTA
TCAAGCAAGAAGTTGGGAGTGGAAGGGAAGTGCAATGTTGGGTTGGTGAT
AGAGAACTCATCGAGGCCGCAGAAGAAGGCGACGGCGCATCACATGAAAA
CGAGGCCACGCAAGACTCAGCCTTGGGACGTCAATCGAAAACCAACCGTT
TACCCTCCTCTGCCTCCTCTTCCTCCTGATTGGTCACTTGTTTCTGATGA
TACCGACACTGATGCATCTGCTGCTGCGCCTGGGGCCGACGCCACTGAGC
CTGCCGCTTTAGAAGCACCACTTGCGAGTGGTTAGCTTCTTGGCTAGTGA
CTTCTGTCCATTTTGTTTTGGCACTCTTTGGTTCTTGTTCTCCCTTTATG
GTATCATTTTCTTGTTTTAATGATTAATGGAAATTAGCTTNNNNAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANNNNNNN
AANNANANAAAAAAAAAAAAAAAAAAAAAAAGGG
back to top