EY757646

Overview
NameEY757646
Unique NameEY757646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13432 contig Csv1_Contig13432:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757646 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 1.055e-106
Identity = 184/227 (81.06%), Postives = 200/227 (88.11%), Query Frame = 1
Query:   13 PLVTGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIV 693
            PL  GLAEDIEN VV I W+RK LG+FF+TKYDWDLLAARSIWAFGPD  GPNIL+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA IA EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV
Sbjct:  691 PLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIV 917          
BLAST of EY757646 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 1.378e-106
Identity = 183/227 (80.62%), Postives = 200/227 (88.11%), Query Frame = 1
Query:   13 PLVTGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIV 693
            PL  GLAEDIEN VV I W+RK LG+FF+TKYDWDLLAARSIWAFGPD  GPNIL+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV
Sbjct:  691 PLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIV 917          
BLAST of EY757646 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 1.378e-106
Identity = 183/227 (80.62%), Postives = 200/227 (88.11%), Query Frame = 1
Query:   13 PLVTGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIV 693
            PL  GLAEDIEN VV I W+RK LG+FF+TKYDWDLLAARSIWAFGPD  GPNIL+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV
Sbjct:  690 PLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIV 916          
BLAST of EY757646 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 1.378e-106
Identity = 183/227 (80.62%), Postives = 200/227 (88.11%), Query Frame = 1
Query:   13 PLVTGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIV 693
            PL  GLAEDIEN VV I W+RK LG+FF+TKYDWDLLAARSIWAFGPD  GPNIL+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV
Sbjct:  691 PLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIV 917          
BLAST of EY757646 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 1.378e-106
Identity = 183/227 (80.62%), Postives = 200/227 (88.11%), Query Frame = 1
Query:   13 PLVTGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSIV 693
            PL  GLAEDIEN VV I W+RK LG+FF+TKYDWDLLAARSIWAFGPD  GPNIL+DDTLP+EVDK+LL +VKDSIVQGFQWG REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+RRRGHVT D P PG+P Y +KAF+P I+SFGFETDLR HTQGQAFSLSVF HW IVPGDPLDKSIV
Sbjct:  691 PLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIV 917          
BLAST of EY757646 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 9.920e-89
Identity = 149/228 (65.35%), Postives = 184/228 (80.70%), Query Frame = 1
Query:    7 VRPLVTGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKSI 690
            V PL  G++ DIENG V+I+W +K + +FF+  YDWDLLA+RSIWAFGPD +G NIL DDTL T+VDK++LN+VK+ I QGFQWG REGPLCDE IRNV F+++D  +APE ++RG GQIIPTARRV YS+FL A+PRLMEPVY VE+  P D +  IY +L+RRRGHV  D+P+PG+P Y+V+A +PVI+S GFETDLR HTQGQA    VFDHW +VPGDPLDKSI
Sbjct:  702 VEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSI 929          
BLAST of EY757646 vs. ExPASy Swiss-Prot
Match: EF2_RAT (Elongation factor 2 OS=Rattus norvegicus GN=Eef2 PE=1 SV=4)

HSP 1 Score: 245.358 bits (625), Expect = 2.225e-64
Identity = 121/228 (53.07%), Postives = 148/228 (64.91%), Query Frame = 1
Query:    4 RVRPLVTGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKS 687
            + RP   GLAEDI+ G VS     K    +   KY+WD+  AR IW FGPD  GPNIL D T   +     LN +KDS+V GFQW  +EG LC+E +R V+F + D  +  + +HRG GQIIPTARR  Y++ L A PRLMEP+Y VEIQ P   V  IY VL+R+RGHV  +    GTP ++VKA+LPV ESFGF  DLR +T GQAF   VFDHW I+PGDP D S
Sbjct:  605 KARPFPDGLAEDIDKGEVSARQELKARARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNS 828          
BLAST of EY757646 vs. ExPASy Swiss-Prot
Match: EF2_MOUSE (Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 2.225e-64
Identity = 121/228 (53.07%), Postives = 148/228 (64.91%), Query Frame = 1
Query:    4 RVRPLVTGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKS 687
            + RP   GLAEDI+ G VS     K    +   KY+WD+  AR IW FGPD  GPNIL D T   +     LN +KDS+V GFQW  +EG LC+E +R V+F + D  +  + +HRG GQIIPTARR  Y++ L A PRLMEP+Y VEIQ P   V  IY VL+R+RGHV  +    GTP ++VKA+LPV ESFGF  DLR +T GQAF   VFDHW I+PGDP D S
Sbjct:  605 KARPFPDGLAEDIDKGEVSARQELKARARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNS 828          
BLAST of EY757646 vs. ExPASy Swiss-Prot
Match: EF2_MESAU (Elongation factor 2 OS=Mesocricetus auratus GN=EEF2 PE=2 SV=3)

HSP 1 Score: 245.358 bits (625), Expect = 2.225e-64
Identity = 121/228 (53.07%), Postives = 148/228 (64.91%), Query Frame = 1
Query:    4 RVRPLVTGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKS 687
            + RP   GLAEDI+ G VS     K    +   KY+WD+  AR IW FGPD  GPNIL D T   +     LN +KDS+V GFQW  +EG LC+E +R V+F + D  +  + +HRG GQIIPTARR  Y++ L A PRLMEP+Y VEIQ P   V  IY VL+R+RGHV  +    GTP ++VKA+LPV ESFGF  DLR +T GQAF   VFDHW I+PGDP D S
Sbjct:  605 KARPFPDGLAEDIDKGEVSARQELKARARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNS 828          
BLAST of EY757646 vs. ExPASy Swiss-Prot
Match: EF2_PONAB (Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 2.906e-64
Identity = 121/228 (53.07%), Postives = 148/228 (64.91%), Query Frame = 1
Query:    4 RVRPLVTGLAEDIENGVVSIDWSRKTLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFSLSVFDHWAIVPGDPLDKS 687
            + RP   GLAEDI+ G VS     K    +   KY+WD+  AR IW FGPD  GPNIL D T   +     LN +KDS+V GFQW  +EG LC+E +R V+F + D  +  + +HRG GQIIPTARR  Y++ L A PRLMEP+Y VEIQ P   V  IY VL+R+RGHV  +    GTP ++VKA+LPV ESFGF  DLR +T GQAF   VFDHW I+PGDP D S
Sbjct:  605 KARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNS 828          
The following BLAST results are available for this feature:
BLAST of EY757646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
U5S1_CHICK1.055e-10681.06116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB1.378e-10680.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE1.378e-10680.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN1.378e-10680.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN1.378e-10680.62116 kDa U5 small nuclear ribonucleoprotein compone... [more]
SN114_SCHPO9.920e-8965.35114 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_RAT2.225e-6453.07Elongation factor 2 OS=Rattus norvegicus GN=Eef2 P... [more]
EF2_MOUSE2.225e-6453.07Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 S... [more]
EF2_MESAU2.225e-6453.07Elongation factor 2 OS=Mesocricetus auratus GN=EEF... [more]
EF2_PONAB2.906e-6453.07Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-025-H06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757646 ID=EY757646; Name=EY757646; organism=Citrus sinensis; type=EST; length=694bp
CCACGCGTCCGACCATTGGTGACAGGACTTGCCGAGGATATTGAGAACGG
CGTTGTAAGTATTGATTGGAGTCGGAAGACGCTTGGTGATTTCTTTAAAA
CAAAATATGACTGGGATTTACTTGCAGCACGATCTATATGGGCATTTGGA
CCTGATAAGCAGGGACCTAATATTTTATTAGATGACACACTCCCAACGGA
AGTTGACAAGAGCTTGCTGAATGCTGTTAAGGATTCCATTGTTCAAGGCT
TTCAGTGGGGTGCTCGAGAAGGACCCCTCTGTGATGAACCTATCAGAAAT
GTCAAGTTTAAAATAGTCGATGCAAGGATTGCACCTGAACCGCTGCATCG
AGGATCTGGTCAGATCATTCCCACAGCTCGACGTGTGGCTTATTCAGCTT
TTCTTATGGCTACCCCTCGGCTTATGGAACCGGTGTATTATGTTGAGATA
CAAACTCCAATTGATTGTGTCTCTGCAATCTACACGGTGTTATCTAGAAG
GCGTGGACATGTTACTGCCGATGTTCCTCAACCAGGAACTCCAGCTTATA
TTGTTAAGGCATTTCTACCAGTGATTGAGAGTTTTGGTTTTGAGACGGAC
TTGAGGTACCATACTCAAGGGCAAGCATTTTCCCTTTCAGTCTTTGATCA
TTGGGCTATAGTTCCTGGAGATCCCCTTGACAAGAGCATAGTTC
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