EY757635

Overview
NameEY757635
Unique NameEY757635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9584 contig Csv1_Contig9584:402..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.176e-17
Identity = 43/59 (72.88%), Postives = 44/59 (74.58%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +YS  VSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH             SKKR
Sbjct:   94 KYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.840e-14
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 137
            +YS  +SNALD KLR+DLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:   94 KYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.555e-14
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +YS  ++N+LD KLR+DLERLKKIR HRGLRHYWGLRVRGQH             SKK+
Sbjct:   94 KYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.251e-13
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +YS  ++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   94 KYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.251e-13
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +YS  ++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   94 KYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.251e-13
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +YS  ++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   94 KYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.251e-13
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +YS  ++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   94 KYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.251e-13
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +YS  ++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   94 KYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.251e-13
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +YS  ++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   94 KYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of EY757635 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.251e-13
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 3
Query:   12 RYSLAVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXXSKKR 188
            +YS  ++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH             SKK+
Sbjct:   94 KYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
The following BLAST results are available for this feature:
BLAST of EY757635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RS18_ARATH2.176e-1772.8840S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_AEQIR3.840e-1483.3340S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_BRABE8.555e-1461.0240S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_RAT3.251e-1359.3240S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG3.251e-1359.3240S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE3.251e-1359.3240S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_ICTPU3.251e-1359.3240S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_HUMAN3.251e-1359.3240S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
RS18_DANRE3.251e-1359.3240S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_CAPHI3.251e-1359.3240S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-025-G04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757635 ID=EY757635; Name=EY757635; organism=Citrus sinensis; type=EST; length=448bp
CCACGCGTCCGAGGTACTCCCTGGCCGTGTCTAATGCATTGGACATGAAG
CTTAGGGATGATCTTGAGCGCTTGAAGAAGATCAGAAACCACCGTGGTCT
ACGACACTACTGGGGTCTTAGAGTTCGTGGACAGCACACCAAGACTACTG
GACGCAGGGGAAAGACCGTTGGTGTCTCCAAGAAGCGTTGAGTTTTGTCA
TCTCCTATTGGTTCATCAAGCTGCAAGTTTTGTTTACATGTTAGTTTTGC
ATCGTTCAGTATGTCTGTCTTGTAGAAGAATTGTTTTTGATAATTTTCTT
CAGTTTATTTTCTTAGGTTGTCTTTTTGACTGAATTGAAAGGAATTCCAT
TTGATATTGTGATTAAAAAGTCATCCATGTTTTATTTAATCAGGAGGGTA
ATATTTCAGTTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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