EY757537

Overview
NameEY757537
Unique NameEY757537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY757537 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.000e-26
Identity = 59/92 (64.13%), Postives = 66/92 (71.74%), Query Frame = 2 
Query:    8 SAKPSWPSSFQPSVPPYTGCNAQAPAHSGYDTPVRTASSSSSFYDNQLCPICLGNPKDMAFGCGHQTCCECGEDLQSCPICRTPIQTRIRLY 283
            S KPS   SF+PSVPP+         +    +PV   +SS+S  DNQLCPICL NPKDMAFGCGHQTCCECG DLQ CPICR PIQTRI+LY
Sbjct:  384 SPKPSRLPSFKPSVPPHP-----TEGYHVRSSPVPPPTSSAS--DNQLCPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468
[Close]
BLAST of EY757537 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.419e-22
Identity = 50/84 (59.52%), Postives = 57/84 (67.86%), Query Frame = 2 
Query:   32 SFQPSVPPYTGCNAQAPAHSGYDTPVRTASSSSSFYDNQLCPICLGNPKDMAFGCGHQTCCECGEDLQSCPICRTPIQTRIRLY 283
            +F+PSVPPY               P  +   SS+  D QLCPICL NPK+MAFGCGHQTCCECG DL+ CPICR PIQTRI+LY
Sbjct:  422 NFEPSVPPY---------------PFESKQMSSAD-DIQLCPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489
The following BLAST results are available for this feature:
BLAST of EY757537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RGLG2_ARATH1.000e-2664.13E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH7.419e-2259.52E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-024-E12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757537 ID=EY757537; Name=EY757537; organism=Citrus sinensis; type=EST; length=778bp
CCACGCGTCCGCAAAACCTTCATGGCCAAGCAGTTTTCAGCCATCTGTAC
CTCCTTATACTGGATGTAATGCACAAGCACCTGCTCATTCTGGATATGAT
ACACCAGTCAGAACGGCTTCGTCCTCAAGTTCTTTTTATGATAACCAGCT
GTGCCCCATTTGTCTTGGCAATCCAAAGGACATGGCCTTCGGTTGCGGAC
ATCAGACATGCTGTGAATGTGGAGAAGACCTCCAATCATGCCCCATTTGT
CGGACCCCAATACAGACGAGAATCAGGCTTTATTAGGCAGTTTGCACCTA
GATTTTTTATTTGGTTTGGCTATAGCCTATTAGCTGATTCAAATGCTGAG
GTTCCCTCAAGAGACAAAAGGGGCTGTCAGAAACTTATTGGACATGAATT
CATGGCCCACAGACAAAAAGATGTAGTTGCTCGCAATCTGATGCTTAAGC
TTATGTAGCGGCTGCTCGCAGGGTGTTTCAAGTGAAGAACAGGGTTAAGC
TTCTTAGATTTTCTGATGGCTACAACTTTTGGAGGACTATTATTTTAGTA
AAATTCTCCGCTTTAATAGAGTAGTACTGCACTTAAGGAGCCTCCTCATC
CCGTCATTCATTTATGCTATTTGCTAAATCATCTTTAACCATAGTTTGTA
TAATTTGGTGGAAAGTAACAGATCTAGTAGAAATCCAATGTCATCGTTCA
TATTTGTAAACTTTTTAATTTGTTTTGATGTACATAAATTAATGATTAAA
ATTCAGACATGCTTTTGGTGGAANNNAN
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