EY757534

Overview
NameEY757534
Unique NameEY757534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757534 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.486e-25
Identity = 58/97 (59.79%), Postives = 65/97 (67.01%), Query Frame = 2
Query:   32 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLRTA 322
            M   EE  V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL                     R  +R +  LFVRGDGVIL+SPPLRT+
Sbjct:    1 MDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97          
BLAST of EY757534 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 7.165e-25
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 2
Query:   50 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 316
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of EY757534 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 7.165e-25
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 2
Query:   50 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 316
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of EY757534 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 7.165e-25
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 2
Query:   50 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 316
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of EY757534 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 9.063e-20
Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 2
Query:   41 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPP 310
            E   AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LG                    +T R+    LFVRGD VIL++PP
Sbjct:    2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91          
The following BLAST results are available for this feature:
BLAST of EY757534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM3_DICDI5.486e-2559.79Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
LSM3_MOUSE7.165e-2561.80U6 snRNA-associated Sm-like protein LSm3 OS=Mus mu... [more]
LSM3_HUMAN7.165e-2561.80U6 snRNA-associated Sm-like protein LSm3 OS=Homo s... [more]
LSM3_BOVIN7.165e-2561.80U6 snRNA-associated Sm-like protein LSm3 OS=Bos ta... [more]
LSM3_SCHPO9.063e-2053.33Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-024-E08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757534 ID=EY757534; Name=EY757534; organism=Citrus sinensis; type=EST; length=519bp
CCACGCGTCCGGGGAGAGCAACTGAGCAAGAATGGCAAGCGAAGAAGAAA
GCGCAGTGAAGGAGCCGTTGGATCTCATAAGACTCAGCCTCGACGAGCGC
ATCTACGTTAAGCTCCGATCCGACCGTGAACTCCGCGGCAAACTCCATGC
ATATGATCAACATTTAAACATGATTCTTGGGGACGTCGAAGAAGTTGTTA
CTACAGTGGAAATCGATGATGAAACTTATGAAGAGATTGTTCGGACTACA
AGGCGTACTGTTCCGTTTCTCTTTGTAAGAGGGGATGGTGTCATCCTAGT
TTCTCCTCCACTGAGGACAGCTTAAATCGAAGAACAGGGTGCACACTCGA
TGAAGAAACCACCAATTTTACATTAATGCTTTTCTTTCTGTCACTGTTTT
TGCATTTCCTAGTTTAACATCTCAAACTGATTACATGCTAAGTTGGCAAT
CATGAAATATCACATGTTGTTACGGCGGGCCTTGAATTTGTATTAAAAAA
AAAAAAAAAAAAAAAAAAA
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