EY757516

Overview
NameEY757516
Unique NameEY757516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_SYNY3 (GTP-binding protein TypA/BipA homolog OS=Synechocystis sp. (strain PCC 6803) GN=typA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.745e-23
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 3
Query:   12 GSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIRS-NKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK--NPKFVKR 341
            G +VAFE+G  T YA+ ++++RG  F+ PG  VYKG I+G H RP D+ LNVCK K  TN RS   ++ V L  P D +L+  +EYI  DELVE+TP SIR+ K    K VKR
Sbjct:  485 GVMVAFEEGVATFYAMKNAEDRGVFFITPGTKVYKGMIIGEHNRPQDIELNVCKTKQLTNHRSATGDELVQLQAPEDMNLERALEYIGPDELVEITPESIRLRKVARKKLVKR 597          
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_HAEIN (GTP-binding protein typA/bipA homolog OS=Haemophilus influenzae GN=typA PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.945e-20
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   12 GSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK 320
            G L++   G    YAL   QERG++ +   ++VY+GQI+GIH R  DL++N  + K  TN+R S K+  +VL TP+ +SL+  IE+I +DELVEVTP SIR+ K
Sbjct:  492 GVLISNATGKALGYALFGLQERGKLMIDANIEVYEGQIIGIHSRSNDLTVNCLQGKKLTNMRASGKDDAIVLTTPVKFSLEQAIEFIDDDELVEVTPESIRIRK 595          
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_BACSU (GTP-binding protein typA/bipA homolog OS=Bacillus subtilis GN=typA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.014e-19
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 3
Query:    6 RPGSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIRS-NKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK 320
            R G LV+ E+G  TSY +   ++RG +F+ PG +VY+G IVG H R  DL +NV K K  TN+RS  K+QT  +      SL++ +EY+ EDE  EVTP SIR+ K
Sbjct:  486 RQGVLVSMENGKATSYGIQGIEDRGVIFVEPGTEVYEGMIVGEHNRDNDLVVNVSKMKQQTNVRSATKDQTTTIKKARIMSLEESLEYLNEDEYCEVTPESIRLRK 591          
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_SHIFL (GTP-binding protein typA/bipA OS=Shigella flexneri GN=typA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.033e-19
Identity = 48/104 (46.15%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   12 GSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK 320
            G L++   G   ++AL   Q+RG++FLG G +VY+GQI+GIH R  DL++N    K  TN+R S  ++ VVL  P+  +L+  +E+I +DELVEVTP SIR+ K
Sbjct:  486 GVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRK 589          
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_ECOLI (GTP-binding protein typA/BipA OS=Escherichia coli (strain K12) GN=typA PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.033e-19
Identity = 48/104 (46.15%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   12 GSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK 320
            G L++   G   ++AL   Q+RG++FLG G +VY+GQI+GIH R  DL++N    K  TN+R S  ++ VVL  P+  +L+  +E+I +DELVEVTP SIR+ K
Sbjct:  486 GVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRK 589          
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_ECOL6 (GTP-binding protein typA/bipA OS=Escherichia coli O6 GN=typA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.033e-19
Identity = 48/104 (46.15%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   12 GSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK 320
            G L++   G   ++AL   Q+RG++FLG G +VY+GQI+GIH R  DL++N    K  TN+R S  ++ VVL  P+  +L+  +E+I +DELVEVTP SIR+ K
Sbjct:  486 GVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRK 589          
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_ECO57 (GTP-binding protein typA/bipA OS=Escherichia coli O157:H7 GN=typA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.033e-19
Identity = 48/104 (46.15%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   12 GSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK 320
            G L++   G   ++AL   Q+RG++FLG G +VY+GQI+GIH R  DL++N    K  TN+R S  ++ VVL  P+  +L+  +E+I +DELVEVTP SIR+ K
Sbjct:  486 GVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRK 589          
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_ECO27 (GTP-binding protein typA/bipA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=typA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.033e-19
Identity = 48/104 (46.15%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   12 GSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK 320
            G L++   G   ++AL   Q+RG++FLG G +VY+GQI+GIH R  DL++N    K  TN+R S  ++ VVL  P+  +L+  +E+I +DELVEVTP SIR+ K
Sbjct:  486 GVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRK 589          
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_BUCAP (GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=typA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 44/104 (42.31%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   12 GSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK 320
            G L++   G   ++AL + QERG++FLG G  VY+GQI+G+H R  DL++N    K  TN+R S  ++ ++L T   ++L++ + +I +DELVE+TP SIR+ K
Sbjct:  486 GVLISNSTGMAVAFALFNLQERGKLFLGHGTQVYEGQIIGLHNRSNDLTVNCLTGKKLTNMRASGTDEAIILTTFTKFTLEEALSFINDDELVEITPKSIRLRK 589          
BLAST of EY757516 vs. ExPASy Swiss-Prot
Match: TYPA_BUCAI (GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=typA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 45/104 (43.27%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   12 GSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCK 320
            G L++   G    ++L + QERG++F+G G  VY+GQI+G+H R  DL++N    K  TN+R S  ++ +VL T + ++L++ I +I +DELVEVTP SIR+ K
Sbjct:  486 GVLISNSTGMAVGFSLFNLQERGKLFIGHGAQVYEGQIIGLHNRSNDLTVNCLTGKKLTNMRASGTDEAIVLTTAIHFTLEEAIGFINDDELVEVTPHSIRIRK 589          
The following BLAST results are available for this feature:
BLAST of EY757516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TYPA_SYNY35.745e-2350.44GTP-binding protein TypA/BipA homolog OS=Synechocy... [more]
TYPA_HAEIN5.945e-2047.12GTP-binding protein typA/bipA homolog OS=Haemophil... [more]
TYPA_BACSU1.014e-1947.17GTP-binding protein typA/bipA homolog OS=Bacillus ... [more]
TYPA_SHIFL5.033e-1946.15GTP-binding protein typA/bipA OS=Shigella flexneri... [more]
TYPA_ECOLI5.033e-1946.15GTP-binding protein typA/BipA OS=Escherichia coli ... [more]
TYPA_ECOL65.033e-1946.15GTP-binding protein typA/bipA OS=Escherichia coli ... [more]
TYPA_ECO575.033e-1946.15GTP-binding protein typA/bipA OS=Escherichia coli ... [more]
TYPA_ECO275.033e-1946.15GTP-binding protein typA/bipA OS=Escherichia coli ... [more]
TYPA_BUCAP2.498e-1842.31GTP-binding protein TypA/BipA homolog OS=Buchnera ... [more]
TYPA_BUCAI2.498e-1843.27GTP-binding protein TypA/BipA homolog OS=Buchnera ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-024-C12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757516 ID=EY757516; Name=EY757516; organism=Citrus sinensis; type=EST; length=832bp
CCACGCGTCCGGGTTCATTGGTTGCCTTTGAGGATGGAACGACTACTTCT
TATGCTCTTTCTAGCTCACAGGAAAGGGGGCAGATGTTTCTTGGTCCCGG
AGTGGATGTTTACAAAGGTCAAATAGTAGGCATCCATCAGCGGCCCGGTG
ATTTATCTCTTAATGTGTGCAAGAAAAAGGCAGCCACGAATATACGTTCC
AACAAAGAACAGACAGTGGTCCTTGATACTCCTTTGGATTACAGTCTGGA
CGACTGCATAGAGTACATTCAAGAAGATGAACTAGTGGAGGTCACTCCCT
TGAGCATCCGTATGTGCAAAAATCCAAAGTTTGTGAAAAGGGGGCGGTAA
ATATCTCTTGGATTTACACAGTGTGGATTAGTCAACAAAGCTTTCCTTGC
GATATTACGAATTAGAGCGAAGCTACATATTTCTGCAATTGGATTCTTTT
CTCATTTTGCTCCATTTGAAGCTGCCTTCACAGCTATATTTTTATATACT
GGGATTCTTTGGAAAAATTCAGGTATGTTTGAGTTTTTCCTCGTATAATT
ATTGTATATACAGTTAGGGCACAGTGAAGTCATAATTTTGTTAAAGAGGT
TTAGTAGCCAATATGCTGTTAGGTAATGGGGCAGCTGAAGATTTTGAGTT
GAGCGGCAATGCAGATTCAGACAGTCACTTTGCTAACCGACTGAAAATGA
TAAATTTCAGGTTTATTGTAATTCTATCTCCAATTTTAGCATAATAATAA
ATCAAAACATATTATAAACAAAGTATTTTTTTTCTTTCATAAAATTATGG
NTATTTATTTAAAAAAAAAAAAAAAAAAAAAA
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