EY757477

Overview
NameEY757477
Unique NameEY757477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757477 vs. ExPASy Swiss-Prot
Match: KEULE_ARATH (SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.922e-21
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 2
Query:   20 RIFVSIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTV-DELSLDDIQI 202
            RIFV IVGGATRSEL+VCHKL+ KL RE+ILGSTSLDDPPQFITK+K+LT  D+LSLDD+QI
Sbjct:  605 RIFVFIVGGATRSELKVCHKLSTKLKREVILGSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666          
BLAST of EY757477 vs. ExPASy Swiss-Prot
Match: SEC1A_ORYSJ (Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.671e-19
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 2
Query:   20 RIFVSIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLDDIQI 202
            R+FV ++GGATRSEL   HKL+ KL REIILGS+SLDDPPQFITK+KML+ D+L+LDD+QI
Sbjct:  605 RLFVFVIGGATRSELCAAHKLSSKLKREIILGSSSLDDPPQFITKLKMLSTDDLTLDDLQI 665          
BLAST of EY757477 vs. ExPASy Swiss-Prot
Match: SEC1B_ARATH (Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.227e-16
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 2
Query:   20 RIFVSIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLT-VDELSLDDIQI 202
            RIFV IVGGATRSELRVCHKLT KL+RE+ILGS+S  DP  F+TKMK L   +E+SLDDI I
Sbjct:  601 RIFVFIVGGATRSELRVCHKLTEKLDREVILGSSSFLDPLTFLTKMKQLNEEEEISLDDIVI 662          
BLAST of EY757477 vs. ExPASy Swiss-Prot
Match: SEC1A_ARATH (Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 2.227e-16
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 2
Query:   20 RIFVSIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDEL 181
            RIFV I+GGATRSELRVCHKLT  L RE++LGSTS DDPPQ+ITK+K+L+  ++
Sbjct:  607 RIFVFIIGGATRSELRVCHKLTSSLRREVVLGSTSFDDPPQYITKLKLLSEKDI 660          
BLAST of EY757477 vs. ExPASy Swiss-Prot
Match: SEC1B_ORYSJ (Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.886e-15
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:   20 RIFVSIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLT 169
            RIFV ++GGATRSELR  HKLT KL REI+LGS+S+DDPPQFI+K+KMLT
Sbjct:  603 RIFVFMIGGATRSELRTVHKLTMKLKREIVLGSSSIDDPPQFISKLKMLT 652          
The following BLAST results are available for this feature:
BLAST of EY757477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KEULE_ARATH3.922e-2180.65SNARE-interacting protein KEULE OS=Arabidopsis tha... [more]
SEC1A_ORYSJ3.671e-1972.13Probable protein transport Sec1a OS=Oryza sativa s... [more]
SEC1B_ARATH2.227e-1672.58Protein transport Sec1b OS=Arabidopsis thaliana GN... [more]
SEC1A_ARATH2.227e-1670.37Protein transport Sec1a OS=Arabidopsis thaliana GN... [more]
SEC1B_ORYSJ1.886e-1576.00Probable protein transport Sec1b OS=Oryza sativa s... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-023-H04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757477 ID=EY757477; Name=EY757477; organism=Citrus sinensis; type=EST; length=476bp
TTCCGTCGACCCACGCGTCCGTATTTTTGTATCCATTGTTGGCGGAGCTA
CCAGATCAGAGTTAAGGGTGTGTCACAAGCTCACAAGAAAGCTGAACAGA
GAAATCATTCTAGGCTCCACAAGTCTGGATGATCCGCCTCAATTTATCAC
GAAAATGAAGATGCTAACAGTAGACGAACTGTCATTGGATGATATCCAGA
TCTAAACCTGCTGGGCGGAGTCCGGAGAGTTGAGCTTCAGCTGCAGTCCT
TGATCCTAAACCATTCATGTATATCATTCTCATTCAATCCATTTTTTTCA
ACAATTAATGCCACATCACATGTATGTCTCCAGAATTATGTAGCGGCTGT
CTAGAATTATGCTGTTTGTGTGTATTATATAATTGATGTACTGATTCACC
AAGAAACTCACGTGTATGATAATTGCAACTTAAAAAAAAAAAAAAAAAAC
CGGAAATTTTGAAAAAAAAAAAAAAA
back to top