EY757476

Overview
NameEY757476
Unique NameEY757476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757476 vs. ExPASy Swiss-Prot
Match: SSRP1_VICFA (FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.794e-42
Identity = 78/106 (73.58%), Postives = 93/106 (87.74%), Query Frame = 2
Query:   11 ARDGDEDGXXXXXXXXXDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMDIDSGNESDSA 328
            ++D D DG         DPNAPKRA+SGF+FFSQMEREN+KK+NPGI+FTDVGRVLGE+WK +S EE+EPYE+KA+ADKKRYKDEISGYKNP+PM++DSGNESDSA
Sbjct:  537 SKDADVDGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYKNPQPMNVDSGNESDSA 642          
BLAST of EY757476 vs. ExPASy Swiss-Prot
Match: SSRP1_ARATH (FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.308e-35
Identity = 64/88 (72.73%), Postives = 83/88 (94.32%), Query Frame = 2
Query:   62 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMDIDSGNESDS 325
            DPNAPKRAMSGF+FFSQMER+NIKK +PGIAF +VG+VLG++W++MS +++EPYE+KA+ DK+RYKDEIS YKNP+PM++DSGN+SDS
Sbjct:  558 DPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQPMNVDSGNDSDS 645          
BLAST of EY757476 vs. ExPASy Swiss-Prot
Match: SSRP1_CATRO (FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.656e-27
Identity = 57/89 (64.04%), Postives = 72/89 (80.90%), Query Frame = 2
Query:   62 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMDIDSGNESDSA 328
            DPNAPK ++S F+FFSQ EREN+KK NPGIAFTDVG+VLG+R  K  + ++   + +  ADKKRY DEIS YKNP+PM++DSGN+SDSA
Sbjct:  552 DPNAPK-SISAFMFFSQTERENVKKDNPGIAFTDVGKVLGDRCNKCQLRKKHLLKQRLVADKKRYTDEISNYKNPQPMNVDSGNDSDSA 639          
BLAST of EY757476 vs. ExPASy Swiss-Prot
Match: SSRP1_MAIZE (FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.442e-22
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 2
Query:   11 ARDGDEDGXXXXXXXXXDPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMDIDSGNESD 322
            ARD DE           DPNAPKRAM+ F++FS  ER N+K SNP +  T++ + LGE W+KMS EE++PY  +A+ DKKRY+ E + Y+    +D+DSGNESD
Sbjct:  537 ARD-DEGQEKKKPKKKKDPNAPKRAMTPFMYFSMAERGNMKSSNPDLPTTEIAKKLGEMWQKMSGEEKQPYIQQAQVDKKRYEKESAVYRGEATVDVDSGNESD 639          
BLAST of EY757476 vs. ExPASy Swiss-Prot
Match: SSP1B_ORYSJ (FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica GN=SSRP1-B PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.883e-22
Identity = 45/87 (51.72%), Postives = 66/87 (75.86%), Query Frame = 2
Query:   62 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMDIDSGNESD 322
            DPNAPKRA++ F++FS+ ER N+K SNP +A T++ + LGERW+KM+ EE++PY  +++ DKKRY +E + Y+    MD+DSG  SD
Sbjct:  554 DPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVEQSQVDKKRYAEESAAYRGAAAMDVDSGPASD 640          
BLAST of EY757476 vs. ExPASy Swiss-Prot
Match: NHP6_NEUCR (Non-histone chromosomal protein 6 OS=Neurospora crassa GN=nhp-6 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.033e-20
Identity = 41/72 (56.94%), Postives = 58/72 (80.56%), Query Frame = 2
Query:   62 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGY 277
            DPNAPKR +S ++FF+  +REN+++ NPG++F  VG++LGERWK +S ++R PYE+KA ADKKRY+DE   Y
Sbjct:   22 DPNAPKRGLSAYMFFANEQRENVREENPGVSFGQVGKILGERWKALSDKQRAPYEAKAAADKKRYEDEKQAY 93          
BLAST of EY757476 vs. ExPASy Swiss-Prot
Match: NHP6_GIBZE (Non-histone chromosomal protein 6 OS=Gibberella zeae GN=NHP6 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.302e-20
Identity = 41/72 (56.94%), Postives = 58/72 (80.56%), Query Frame = 2
Query:   62 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGY 277
            DPNAPKR +S ++FF+  +REN+++ NPGI+F  VG++LGERWK ++ ++R PYE+KA ADKKRY+DE   Y
Sbjct:   20 DPNAPKRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRYEDEKQAY 91          
BLAST of EY757476 vs. ExPASy Swiss-Prot
Match: SSP1A_ORYSJ (FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica GN=SSRP1-A PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 45/90 (50.00%), Postives = 65/90 (72.22%), Query Frame = 2
Query:   62 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMDIDS---GNESD 322
            DPNAPKRAM+ F++FS  ER N+K +NP +  T++ + LGE W+KM+ EE++PY  +++ DKKRY+ E + Y+    MD+DS   GNESD
Sbjct:  552 DPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQVDKKRYEKESAVYRGAAAMDVDSGSGGNESD 641          
BLAST of EY757476 vs. ExPASy Swiss-Prot
Match: NHP6_EMENI (Non-histone chromosomal protein 6 OS=Emericella nidulans GN=nhp6 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 2
Query:   62 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYK 280
            DPNAPKR +S ++FF+   R+ +++ NPGI+F  VG++LGE+WK +S +ER+PYE KA ADKKRY+DE + YK
Sbjct:   23 DPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDEKAAYK 95          
BLAST of EY757476 vs. ExPASy Swiss-Prot
Match: NHP6_ASPFU (Non-histone chromosomal protein 6 OS=Aspergillus fumigatus GN=nhp6 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.746e-20
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 2
Query:   62 DPNAPKRAMSGFIFFSQMERENIKKSNPGIAFTDVGRVLGERWKKMSVEEREPYESKARADKKRYKDEISGYKNPKPMD 298
            DPNAPKR +S ++FF+   R+ +++ NPGI+F  VG++LGERWK +S  ER PYE KA ADKKRY+DE + Y   +  D
Sbjct:   21 DPNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEEKAAADKKRYEDEKASYNAAQDED 99          
The following BLAST results are available for this feature:
BLAST of EY757476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SSRP1_VICFA2.794e-4273.58FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 ... [more]
SSRP1_ARATH3.308e-3572.73FACT complex subunit SSRP1 OS=Arabidopsis thaliana... [more]
SSRP1_CATRO5.656e-2764.04FACT complex subunit SSRP1 OS=Catharanthus roseus ... [more]
SSRP1_MAIZE1.442e-2250.00FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE... [more]
SSP1B_ORYSJ1.883e-2251.72FACT complex subunit SSRP1-B OS=Oryza sativa subsp... [more]
NHP6_NEUCR1.033e-2056.94Non-histone chromosomal protein 6 OS=Neurospora cr... [more]
NHP6_GIBZE2.302e-2056.94Non-histone chromosomal protein 6 OS=Gibberella ze... [more]
SSP1A_ORYSJ3.926e-2050.00FACT complex subunit SSRP1-A OS=Oryza sativa subsp... [more]
NHP6_EMENI3.926e-2056.16Non-histone chromosomal protein 6 OS=Emericella ni... [more]
NHP6_ASPFU8.746e-2053.16Non-histone chromosomal protein 6 OS=Aspergillus f... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-023-H03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757476 ID=EY757476; Name=EY757476; organism=Citrus sinensis; type=EST; length=654bp
CCACGCGTCCGCCAGGGATGGAGATGAAGATGGGAAGAAGAAAAAACAGA
AAAAGAAGAAGGATCCGAATGCACCAAAGAGGGCAATGTCTGGTTTTATT
TTTTTCTCTCAAATGGAAAGAGAGAATATCAAGAAAAGTAATCCTGGAAT
TGCATTTACGGATGTTGGAAGAGTCCTCGGAGAGAGGTGGAAAAAGATGA
GCGTGGAAGAGAGAGAGCCATATGAATCCAAAGCTCGTGCTGATAAAAAA
CGTTACAAAGATGAAATCAGTGGTTACAAGAATCCCAAGCCGATGGATAT
TGACTCTGGAAATGAGTCTGACAGTGCATAGATACCAAGAGCAAAGAATC
ACTAAATCATCAGTTTAGGATTGTCATGGACTTCTATCTTATTATTATGG
GCTGCATTTTACATCTACCTTAAGCGTCTTGGGCAATCATGTTGTATAGG
TGATTCTAACTGTGCCTAGATTACGGGAAAAAACTGTTACCTCTACATTT
TGTTTCTAGTCTTGATGTATTTTTGCCTGTAGTAGCAACACATCCTTTGG
ATGTATGATGTGCTTACTGATTTCACAGTTGGCATGAGGGGGAATCAGTT
CTAGTAGTTCTAAATATTAATGGGGTAAAAAAAAAAAAAAAAAAAAAAAN
NAAA
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