EY757465

Overview
NameEY757465
Unique NameEY757465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY757465 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.076e-32
Identity = 62/118 (52.54%), Postives = 77/118 (65.25%), Query Frame = 3 
Query:  276 RNDKISITDFGGVGDGKTLNTKAFREAIYRIQHLRRSGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYXXXXXXXXXXYMSFIHGDGLXDVVITGENG 629
            R    S+ DFGGVGDG+TLNTKAF++A+  +      GG  LYVP G +LTGSF+LTSH TL+L + AV+ A+QD   WP+I PLPSY          Y S I G  L DV+ITG+NG
Sbjct:   59 RAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNG 176

HSP 2 Score: 27.7202 bits (60), Expect = 9.076e-32
Identity = 11/28 (39.29%), Postives = 15/28 (53.57%), Query Frame = 2 
Query:  629 TIDGQXAIWXDMWRQSTLPFTRPISLNL 712
            TIDGQ  +W   +    L +TRP  + L
Sbjct:  177 TIDGQGGLWWQRFHGGKLKYTRPYLIEL 204

HSP 3 Score: 22.3274 bits (46), Expect = 9.076e-32
Identity = 19/54 (35.19%), Postives = 26/54 (48.15%), Query Frame = 1 
Query:  700 LIEFMNSRSIIISHVIFQNSPF*T-----SPXLLQHXVSVM*PSGSADSPNTMG 846
            LIE M S  I IS++   NSP        S  +L   ++++ P     SPNT G
Sbjct:  201 LIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAP---VRSPNTDG 251
The following BLAST results are available for this feature:
BLAST of EY757465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI9.076e-3252.54Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-023-G03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757465 ID=EY757465; Name=EY757465; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGCCCACGCGTCCGAGTATATATATTTTATATCTTCGCTAA
AGAGTTTTTTTGTACCCTCTCTCTTTGTCACTGCTTGAAATATTAAAAAT
CTTCACTAGAGCTCTCATAAACAATCATTTCTCTCCTAAAATACCGCCCT
TGAGTATCGCCAAAATTACGAAAATGTTCCGTTTCCTCGTCACGCTTTCG
ATTCTCTTATCATATTTCAACTGCTTTTCCCTCGCGAGCGTGGTGACGTG
CTCGGGGATTGTACCGATGAGGTACCGAAACGACAAGATATCGATCACCG
ATTTCGGTGGCGTCGGTGACGGAAAGACTTTGAACACGAAAGCGTTTCGT
GAGGCAATCTACCGGATTCAGCATTTGAGAAGGAGTGGCGGCACGCTTCT
TTATGTTCCTCCTGGGGTGTACTTAACGGGAAGCTTTAATCTTACCAGTC
ACATGACTCTTTATTTGGCTAAAGGTGCTGTTATCAAGGCCACTCAGGAT
ACTTGGAATTGGCCTTTAATTGCCCCTTTGCCATCGTATGGAAGGGGAAG
GGAGCGCCCTGNAAGGAGGTATATGAGTTTTATTCATGGTGATGGACTTC
ANGACGTGGTAATCACTGGTGAGAATGGACAATCGATGGTCAGGNAGCCA
TCTGGNTGGACATGTGGAGGCAGAGTACTCTTCCTTTCACGAGACCAATC
TCATTGAATTTATGAATTCTAGGAGCATAATAATTTCCCATGTGATTTTT
CAGAATTCACCCTTTTGAACATCACCCTGNTTATTGCAGCATGNTGTATC
CGTTATGTAACCATCTGGCTCAGCTGACTCTCCCAATACGATGGGATGAT
CCAATTCAGCTCGATGGCTGCATGAAGACC
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