EY757390

Overview
NameEY757390
Unique NameEY757390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757390 vs. ExPASy Swiss-Prot
Match: TMEDA_TAKRU (Transmembrane emp24 domain-containing protein 10 OS=Takifugu rubripes GN=tmed10 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/129 (42.64%), Postives = 85/129 (65.89%), Query Frame = 2
Query:    5 GQFAFTTHEAGNYLACFW--VDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 385
            G+FAFTT +   +  CF     G  P   D  VN+D K G+ AK++E +A+ EKL+ +E+ELR+LE   E+I  +  Y+K +E EMR+ +E TN+RV ++S+ S+   I ++  QV++L+RFF+ KKLI
Sbjct:   87 GKFAFTTEDYDMFEVCFESKCTGRVP---DQLVNLDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 212          
BLAST of EY757390 vs. ExPASy Swiss-Prot
Match: TMEDA_RAT (Transmembrane emp24 domain-containing protein 10 OS=Rattus norvegicus GN=Tmed10 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.942e-20
Identity = 54/130 (41.54%), Postives = 85/130 (65.38%), Query Frame = 2
Query:    5 GQFAFTTHEAGNYLACFWVDGHNPGGG---DVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 385
            G+FAFTT +   +  CF     + G G   D  V +D K G+ AK++E +A+ EKL+ +E+ELR+LE   E+I  +  Y+K +E EMR+ +E TN+RV ++S+ S+   I ++  QV++L+RFF+ KKLI
Sbjct:   93 GKFAFTTEDYDMFEVCF----ESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of EY757390 vs. ExPASy Swiss-Prot
Match: TMEDA_RABIT (Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.942e-20
Identity = 54/130 (41.54%), Postives = 85/130 (65.38%), Query Frame = 2
Query:    5 GQFAFTTHEAGNYLACFWVDGHNPGGG---DVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 385
            G+FAFTT +   +  CF     + G G   D  V +D K G+ AK++E +A+ EKL+ +E+ELR+LE   E+I  +  Y+K +E EMR+ +E TN+RV ++S+ S+   I ++  QV++L+RFF+ KKLI
Sbjct:   93 GKFAFTTEDYDMFEVCF----ESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of EY757390 vs. ExPASy Swiss-Prot
Match: TMEDA_MOUSE (Transmembrane emp24 domain-containing protein 10 OS=Mus musculus GN=Tmed10 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.942e-20
Identity = 54/130 (41.54%), Postives = 85/130 (65.38%), Query Frame = 2
Query:    5 GQFAFTTHEAGNYLACFWVDGHNPGGG---DVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 385
            G+FAFTT +   +  CF     + G G   D  V +D K G+ AK++E +A+ EKL+ +E+ELR+LE   E+I  +  Y+K +E EMR+ +E TN+RV ++S+ S+   I ++  QV++L+RFF+ KKLI
Sbjct:   93 GKFAFTTEDYDMFEVCF----ESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of EY757390 vs. ExPASy Swiss-Prot
Match: TMEDA_HUMAN (Transmembrane emp24 domain-containing protein 10 OS=Homo sapiens GN=TMED10 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.942e-20
Identity = 54/130 (41.54%), Postives = 85/130 (65.38%), Query Frame = 2
Query:    5 GQFAFTTHEAGNYLACFWVDGHNPGGG---DVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 385
            G+FAFTT +   +  CF     + G G   D  V +D K G+ AK++E +A+ EKL+ +E+ELR+LE   E+I  +  Y+K +E EMR+ +E TN+RV ++S+ S+   I ++  QV++L+RFF+ KKLI
Sbjct:   93 GKFAFTTEDYDMFEVCF----ESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of EY757390 vs. ExPASy Swiss-Prot
Match: TMEDA_BOVIN (Transmembrane emp24 domain-containing protein 10 OS=Bos taurus GN=TMED10 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.942e-20
Identity = 54/130 (41.54%), Postives = 85/130 (65.38%), Query Frame = 2
Query:    5 GQFAFTTHEAGNYLACFWVDGHNPGGG---DVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 385
            G+FAFTT +   +  CF     + G G   D  V +D K G+ AK++E +A+ EKL+ +E+ELR+LE   E+I  +  Y+K +E EMR+ +E TN+RV ++S+ S+   I ++  QV++L+RFF+ KKLI
Sbjct:   93 GKFAFTTEDYDMFEVCF----ESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of EY757390 vs. ExPASy Swiss-Prot
Match: TMEDA_MESAU (Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.537e-20
Identity = 54/130 (41.54%), Postives = 85/130 (65.38%), Query Frame = 2
Query:    5 GQFAFTTHEAGNYLACFWVDGHNPGGG---DVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 385
            G+FAFTT +   +  CF     + G G   D  V +D K G+ AK++E +A+ EKL+ +E+ELR+LE   E+I  +  Y+K +E EMR+ +E TN+RV ++S+ S+   I ++  QV++L+RFF+ KKLI
Sbjct:   93 GKFAFTTEDYDMFEVCF----ESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMLCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of EY757390 vs. ExPASy Swiss-Prot
Match: TMEDA_PONAB (Transmembrane emp24 domain-containing protein 10 OS=Pongo abelii GN=TMED10 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.651e-20
Identity = 53/130 (40.77%), Postives = 85/130 (65.38%), Query Frame = 2
Query:    5 GQFAFTTHEAGNYLACFWVDGHNPGGG---DVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 385
            G+FAFTT +   +  CF     + G G   D  V +D K G+ AK++E +A+ EKL+ +E+ELR+LE   E+I  +  Y++ +E EMR+ +E TN+RV ++S+ S+   I ++  QV++L+RFF+ KKLI
Sbjct:   93 GKFAFTTEDYDMFEVCF----ESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMEKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of EY757390 vs. ExPASy Swiss-Prot
Match: TMED9_MOUSE (Transmembrane emp24 domain-containing protein 9 OS=Mus musculus GN=Tmed9 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.902e-16
Identity = 44/130 (33.85%), Postives = 72/130 (55.38%), Query Frame = 2
Query:    5 GQFAFTTHEAGNYLACFWVDGHNPG---GGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 385
            G+F FT+H  G +  C   +        GG + V++D + G  A D+  +A K+KL  ++L +R+L   VE I +   Y + +E   R+ SE TN RV W+S++   + + +   Q+ HLK FF+ KKL+
Sbjct:  106 GRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235          
BLAST of EY757390 vs. ExPASy Swiss-Prot
Match: TMED9_HUMAN (Transmembrane emp24 domain-containing protein 9 OS=Homo sapiens GN=TMED9 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.902e-16
Identity = 44/130 (33.85%), Postives = 72/130 (55.38%), Query Frame = 2
Query:    5 GQFAFTTHEAGNYLACFWVDGHNPG---GGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 385
            G+F FT+H  G +  C   +        GG + V++D + G  A D+  +A K+KL  ++L +R+L   VE I +   Y + +E   R+ SE TN RV W+S++   + + +   Q+ HLK FF+ KKL+
Sbjct:  106 GRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235          
The following BLAST results are available for this feature:
BLAST of EY757390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
TMEDA_TAKRU3.913e-2142.64Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_RAT1.942e-2041.54Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_RABIT1.942e-2041.54Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_MOUSE1.942e-2041.54Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_HUMAN1.942e-2041.54Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_BOVIN1.942e-2041.54Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_MESAU2.537e-2041.54Transmembrane protein Tmp21 OS=Mesocricetus auratu... [more]
TMEDA_PONAB5.651e-2040.77Transmembrane emp24 domain-containing protein 10 O... [more]
TMED9_MOUSE2.902e-1633.85Transmembrane emp24 domain-containing protein 9 OS... [more]
TMED9_HUMAN2.902e-1633.85Transmembrane emp24 domain-containing protein 9 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-022-G09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757390 ID=EY757390; Name=EY757390; organism=Citrus sinensis; type=EST; length=530bp
ATATGGTCAGTTTGCTTTCACGACTCATGAAGCTGGCAACTACCTGGCAT
GTTTTTGGGTGGATGGCCATAATCCAGGAGGTGGAGATGTAAGCGTCAAT
ATTGACTGGAAAACTGGAATTGCAGCTAAGGATTGGGAATCAGTTGCAAG
AAAAGAGAAACTTGAAGGCGTGGAGCTTGAACTGAGGAAACTTGAAGGGG
CAGTAGAGGCCATCCATGAGAATCTACTTTATCTCAAGACCAAGGAAGCA
GAGATGAGGGAAGTAAGTGAAAAAACAAATTCCAGAGTGGCATGGTACAG
TCTCATGTCCTTGGGAGTCTGCATTGTGGTTTCAGGTGTGCAGGTGTGGC
ACTTGAAGCGATTCTTTCAGAAGAAGAAACTTATCTAAATTCACTTCTAA
CATTATATTTCTTGTTAAAAGAGCAAATTGTAGAACACTTTTTTTCCCCC
CTTTTCTGAAGAAATGAATACTGTAGTAGGAAATTTTGGTACTNNNNANA
ANAANNNAAAAAAGAAAAAAAAAAAAAAAA
back to top