EY757385

Overview
NameEY757385
Unique NameEY757385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757385 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.302e-43
Identity = 82/87 (94.25%), Postives = 86/87 (98.85%), Query Frame = 2
Query:   92 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 352
            MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87          
BLAST of EY757385 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.302e-43
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 2
Query:   92 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 352
            MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87          
BLAST of EY757385 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 2
Query:  104 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 352
            +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY +L YFAIAENES  R  +N M++ML PCG PPE+ +D
Sbjct:    3 ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85          
BLAST of EY757385 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  101 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 352
            +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of EY757385 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  101 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 352
            +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of EY757385 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  101 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 352
            +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML P G P ++ ++
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85          
BLAST of EY757385 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  101 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 352
            S+R ++NSQLEHLQ +YVGTGHAD+++ EW  N  RDS +S+IGH   L+ F+IAENES+GR  YN + KM+ PCG  P+ +D+
Sbjct:    2 SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85          
BLAST of EY757385 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  101 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPP 337
            +DR    ++LE LQA+YVG G+A   ++EW VN  RD+ +S +GH P+LAY A A  E   +   N ++KM++PCG PP
Sbjct:    2 ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80          
The following BLAST results are available for this feature:
BLAST of EY757385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SF3BB_ARATH1.302e-4394.25Uncharacterized protein At4g14342 OS=Arabidopsis t... [more]
SF3BA_ARATH1.302e-4394.25Uncharacterized protein At3g23325 OS=Arabidopsis t... [more]
SF3B5_DROME1.107e-2663.86Probable splicing factor 3B subunit 5 OS=Drosophil... [more]
SF3B5_HUMAN2.088e-2559.52Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF... [more]
SF3B5_BOVIN2.088e-2559.52Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B... [more]
SF3B5_MOUSE3.015e-2458.33Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf... [more]
SF3B5_DICDI2.822e-2255.95Splicing factor 3B subunit 5 OS=Dictyostelium disc... [more]
YHV5_SCHPO1.270e-1445.57Uncharacterized protein C211.05 OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-022-G04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757385 ID=EY757385; Name=EY757385; organism=Citrus sinensis; type=EST; length=705bp
ATTTCTTTTTCGCTCTTCAGCTTCAAACCCCTGCTATCGCATTCGCTCTT
CCTCCCTTTCTCGTTATCATTCTCAAAAAAGCACAGCAAAAATGCAGGCG
AGTGATAGGTTTAATATAAACTCCCAGCTAGAGCATCTGCAAGCCAAATA
CGTTGGTACTGGCCATGCTGATTTGAACAGATTTGAATGGGCTGTGAACA
TTCAGCGTGATAGCTATGCGTCGTATATTGGGCATTACCCTATGTTGGCC
TATTTTGCTATTGCCGAGAATGAATCTATTGGAAGGGAACACTATAACTT
TATGCAGAAAATGCTTTTGCCTTGCGGCTTACCCCCTGAAAGAGAAGATG
ATTGAGAGTTTAGGATGCCCTTTCTGAGAAATGAAACATTTTGGGCTCCA
GCTCTCTCCAGGCTGAGGAGCATTTGTGATATATCTAGGTGTTCACTTCA
AGGAACAATGTTCATGTGACACTGACAAAACTGTGTAGTAGTGTGTACTG
AAATGAATGCTCGAGTGTTGTTGTGATCCTTGGAATTATATAAATTTTTA
TGTAGTTAATCAATGTGCTGATAAATTGTTTAAATTAGGGTGTGAAGGCC
ATGGATCTGAACTATGGTATCCACTGCCCTGCTTCCTTTGTGTGATGGTC
TGGTTTTAGTTTTTAGCTGTGAATTGCAATATTTCTAAAAAAAAAAAAAA
AAAAA
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