EY757235

Overview
NameEY757235
Unique NameEY757235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 3.566e-39
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = 2
Query:    8 SALVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            +++V H +M D+EKEI LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC DCH+AAK+ISLIF R++VLRDVQRFHHF DGKCSCGDFW
Sbjct:  515 TSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.040e-30
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            D+E+EEKE AL YHSEKLA+ FGLL+TPP T IRV+KNLRVCGDCH+A K I+ ++NR+IVLRD  RFH F+DG CSCGD+W
Sbjct:  909 DVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.741e-30
Identity = 55/82 (67.07%), Postives = 72/82 (87.80%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            D+++E KE AL +HSE+LAI FG++NTPPGTTIRV+KNLR+CGDCH+  KI+S I +R+I++RD +RFHHFRDG CSCGD+W
Sbjct:  158 DIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGDYW 239          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.453e-29
Identity = 55/91 (60.44%), Postives = 74/91 (81.32%), Query Frame = 2
Query:    2 HASALVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            + S++ H  D+++EEKE+ LR HSEKLAI FG++NT PG+T+ VVKNLRVC DCH+  K+IS I +R+ V+RD +RFHHF+DG CSCGD+W
Sbjct:  571 NTSSVCH--DVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.169e-28
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            D+ +++KEIAL YHSEKLAI F L+ T PGT +R++KNLR+CGDCH   K+IS +F+R+IV+RD  RFHHFRDG CSC DFW
Sbjct:  492 DLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.406e-27
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            D+E+EEKE     HSEKLA+T G L T PGTTIR++KNLR+CGDCHS  K +S I  R I+LRD ++FHHF+DG+CSCGD+W
Sbjct:  584 DIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.836e-27
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   32 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            ++D+E+E  +  HSEKLAIT+GL+ T PGT IR++KNLRVC DCH   K+IS I+ R IV+RD  RFHHFRDGKCSCGD+W
Sbjct:  540 VDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.836e-27
Identity = 57/89 (64.04%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    8 SALVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            S ++H+  +E++EKEI L  HSEKLAI FG+LNT PGT IRV KNLRVC DCH A K IS I +R+I+LRDV+RFH F++G CSCGD+W
Sbjct:  804 SCVLHN--VEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.976e-27
Identity = 47/81 (58.02%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   32 MEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            ++ +E+E+ L+YHSEK+A+ F LLNTPPG+TI + KN+RVCGDCH+A K+ S +  R+I++RD  RFHHF+DG CSC D+W
Sbjct:  553 VDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633          
BLAST of EY757235 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.111e-27
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 2
Query:   29 DMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKIISLIFNRQIVLRDVQRFHHFRDGKCSCGDFW 274
            +ME+E KE ALR+HSEKLAI FGL++T PGT + +VKNLRVC +CH A K+IS I+ R+I+ RD  RFHHFRDG CSC D+W
Sbjct:  660 EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741          
The following BLAST results are available for this feature:
BLAST of EY757235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
PP145_ARATH3.566e-3982.02Pentatricopeptide repeat-containing protein At2g02... [more]
PP347_ARATH1.040e-3070.73Pentatricopeptide repeat-containing protein At4g33... [more]
PPR74_ARATH6.741e-3067.07Pentatricopeptide repeat-containing protein At1g47... [more]
PP258_ARATH7.453e-2960.44Pentatricopeptide repeat-containing protein At3g26... [more]
PP295_ARATH2.169e-2864.63Pentatricopeptide repeat-containing protein At3g62... [more]
PPR10_ARATH1.406e-2763.41Pentatricopeptide repeat-containing protein At1g04... [more]
PP449_ARATH1.836e-2764.20Pentatricopeptide repeat-containing protein At5g66... [more]
PP285_ARATH1.836e-2764.04Pentatricopeptide repeat-containing protein At3g57... [more]
PP252_ARATH6.976e-2758.02Pentatricopeptide repeat-containing protein At3g24... [more]
PPR21_ARATH9.111e-2764.63Pentatricopeptide repeat-containing protein At1g08... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-019-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757235 ID=EY757235; Name=EY757235; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGCTCTAGTCCATCATGGGGATATGGAAGATGAAGAGAAAG
AAATTGCGCTTAGATATCATAGTGAGAAACTAGCCATTACTTTTGGGCTC
CTAAACACTCCACCTGGAACTACAATTCGTGTGGTGAAGAACCTTCGGGT
CTGTGGTGATTGTCATTCTGCGGCTAAAATTATATCACTGATTTTTAATA
GGCAGATAGTCCTTAGAGATGTCCAACGTTTCCATCACTTCAGAGATGGG
AAGTGCTCTTGTGGTGATTTCTGGTGATGAAATTGATTTAACCAGTAATC
ATTTGGAGAAATGTATCTTGGCCTTGTCTAGTGTCCATTGTCACCCCAGA
TATAAGTGAAAAATGCTGTAGTAGTGCTAGTGGGTACTTCATTGCATTGA
CTACTTAGAGGCTTTGCTTGTGCCCCATGTCATTTGAGAACGTGGAAGAA
TGTGCAAATGGAGAACCCACTCAGGATTCCCCACGTAAGTTACTGAGGTA
AAGGAAATATTAAATCATTAAATTCAACAATTGAGAATTTAGATAAAAAA
AAAAAAAAAAAAAAAAAAAGGAGGGTAGCTGCTCTAGAGATACAATCTAT
GCACGCGATGATACGACCTCATACTTCTTCTATGAATCTCAATTAATGAT
CTGCGGGTCGAAGTTCTACGACGTGAATACTGAGACATGCCGGAACTAAC
TACTGGTCGTCTTGCACCTCTCCCCTTTGCGCTAGTGGAATATGACCAGA
CGGACGCACTATCCTCCTTCCACAGTTGAACTGCTAAGTGACTATGCGAG
CCCCCTGAGAGCTCATAAGGGGGGGTGTTGTGTGATTCGGACANTAAACT
GCTATGTTGCAGCGC
back to top