EY757179

Overview
NameEY757179
Unique NameEY757179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY757179_ssr370 microsatellite EY757179_ssr370:370..385. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7102 contig Csv1_Contig7102:812..1478. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            SA+W WMTP +  +PS HD  +G W+P+  D  + R P FG   NI+ G   CG+G    + + +  Y  Y  +LGV      P + L C  Q++F
Sbjct:  231 SALWFWMTP-QSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGV-----SPGDNLDCGNQRSF 320          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 37/96 (38.54%), Postives = 49/96 (51.04%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            SAIW WMTP +  +PS HD   G W+P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y  +LGV      P E L C  Q++F
Sbjct:  224 SAIWFWMTP-QSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGV-----SPGENLDCGNQRSF 313          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            SA+W WMTP +  +PS HD  +G W+P+  D  + R P FG   NI+ G   CG+G    + + +  Y  Y  +LGV      P + L C  Q++F
Sbjct:  226 SALWFWMTP-QSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGV-----SPGDNLDCGNQRSF 315          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 36/96 (37.50%), Postives = 49/96 (51.04%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            SAIW WMTP +  +PS HD   G W+P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y  +LGV      P + L C  Q++F
Sbjct:  218 SAIWFWMTP-QSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGV-----SPGDNLDCGNQRSF 307          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 36/97 (37.11%), Postives = 50/97 (51.55%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFN 298
            +A+W WMTP +  +PS HD   G W P+  D  + R P +G   NI+ G   CG G  D + N +  Y  Y D+LG+G         L C +Q+ FN
Sbjct:  237 TALWFWMTP-QSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGY-----GSNLDCYDQRPFN 327          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 36/96 (37.50%), Postives = 49/96 (51.04%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            SAIW WMTP +  +PS HD   G W+P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y  +LGV      P + L C  Q++F
Sbjct:  220 SAIWFWMTP-QSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGV-----SPGDNLDCGNQRSF 309          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.090e-12
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            +AIW WMTP + ++PS+HD  +G W P+  D  + R P +G   NI+ G   CG G  DA+ + + +Y  Y  +L V      P E L C  Q+ F
Sbjct:  161 TAIWFWMTP-QDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNV-----APGENLDCYNQRNF 250          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.090e-12
Identity = 36/96 (37.50%), Postives = 49/96 (51.04%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            SAIW WMTP +  +PS HD   G W+P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y  +LGV      P + L C  Q++F
Sbjct:  220 SAIWFWMTP-QSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGV-----SPGDNLDCGNQRSF 309          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 37/97 (38.14%), Postives = 50/97 (51.55%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFN 298
            SA W WMTP +  +PS HD  +G W P+ +D  + R P FG   NI+ G   CGQG    + + +  Y  Y D LGVG         L C  Q+++N
Sbjct:  223 SAFWFWMTP-QSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGY-----GNNLDCYNQRSYN 313          
BLAST of EY757179 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 2
Query:    8 SAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 295
            +A+W WMTP +  +PS HD  +G W P+  D  + R P FG   NI+ G   CG+G  + + + +  Y  Y  +LGV      P + L C  Q+ F
Sbjct:  230 TALWFWMTP-QSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGV-----TPGDNLDCVNQRWF 319          
The following BLAST results are available for this feature:
BLAST of EY757179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CHI1_TOBAC2.869e-1336.46Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIC_SOLLC3.747e-1338.54Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_TOBAC3.747e-1336.46Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_SOLTU4.894e-1337.50Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI9_ORYSJ6.391e-1337.11Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_SOLTU8.347e-1337.50Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIQ_TOBAC1.090e-1237.50Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI1_SOLTU1.090e-1237.50Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_THECC3.172e-1238.14Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_SOLTU4.143e-1235.42Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-018-D04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757179 ID=EY757179; Name=EY757179; organism=Citrus sinensis; type=EST; length=673bp
CCACGCGTCCGCAATTTGGAAGTGGATGACCCCAGTCAAGAAATCCCAGC
CTTCAGCCCATGATGCCTTTGTTGGCAACTGGAAGCCCACCAAGAATGAT
ACTTTGTCCAAACGGGGACCTAACTTTGGTACCACAATGAATATCCTCTA
TGGTGAGAGCGTATGCGGTCAGGGTGATATTGATGCTATGAACAACATTG
TCTCTCATTACTTGTATTACCTTGATCTGTTGGGTGTTGGCCGAGAGCAG
GCAGGACCTAATGAAGAACTCTCTTGTGCTGAGCAGAAAGCCTTCAACCC
AAACACCGCACCTTCAGCTGCATCTTCTTGAGGACGTTTATTGTAGCCAA
GCTATTATTGTGGGAGTGACTCTCTCTCTCTCTCTAGGTGGGTACCATTA
CAATAAGACTGGGGTTAATTAAACTATTTGTTGTAAGTTTTTTTTTTTTT
TTCCATCTTTTCATATATTGCGCAAGGTCAATTAGTGTGTGGATTGGTCT
GCCCCTCTTCATTGCCGTTGTAGATTTGAGATTCATTTGGTTTGTAAAAT
CTTCGTTATATCTGGTTACATATGTAATGATGAACCGCATGAACCACTCG
TGTGTTTCAATAGCAGAATTGTAAAGTATATGCTTATATTTTATTAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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