EY757100

Overview
NameEY757100
Unique NameEY757100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY757100 vs. ExPASy Swiss-Prot
Match: CNOT3_MOUSE (CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.237e-41
Identity = 82/153 (53.59%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  339 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLPHGWCQRIKTXVTFEYNYLED 797
            +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS     T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY+YFD+          W QR K   TFEY YLED
Sbjct:  608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-----TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDY--------EKWGQRKKEGFTFEYRYLED 747          
BLAST of EY757100 vs. ExPASy Swiss-Prot
Match: CNOT3_HUMAN (CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.237e-41
Identity = 82/153 (53.59%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  339 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLPHGWCQRIKTXVTFEYNYLED 797
            +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS     T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY+YFD+          W QR K   TFEY YLED
Sbjct:  610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-----TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDY--------EKWGQRKKEGFTFEYRYLED 749          
BLAST of EY757100 vs. ExPASy Swiss-Prot
Match: NOT3_SCHPO (General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe GN=not3 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.579e-32
Identity = 66/139 (47.48%), Postives = 83/139 (59.71%), Query Frame = 3
Query:  384 LPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLPHGWCQRIKTXVTFEYNYLEDE 800
            +P   D+ + + YIP+ P   P  YPQ   P+  +    E +       DTLF+ FYY+  TYQQY+A +ELKKQSWR+H+KY TWFQRHEEPK+  DEFE G+Y YFDF          W QR K    F Y YLED+
Sbjct:  499 VPDATDAAKPQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVD-----PDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDFE-------GDWVQRKKADFRFTYQYLEDD 625          
The following BLAST results are available for this feature:
BLAST of EY757100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CNOT3_MOUSE5.237e-4153.59CCR4-NOT transcription complex subunit 3 OS=Mus mu... [more]
CNOT3_HUMAN5.237e-4153.59CCR4-NOT transcription complex subunit 3 OS=Homo s... [more]
NOT3_SCHPO7.579e-3247.48General negative regulator of transcription subuni... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-017-D06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757100 ID=EY757100; Name=EY757100; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGCATTTGAAAGTAGAGGAGCCACAGCCACCACAGAATTTA
CCTGAGGAGTCAACTCCAGAATCTGCTTCTAGTCCTGGGCTTGGCAAGAA
TCTTATTCATGAGGACGATCTGAAAGCTCCGTATGCAATTGATTCTTCTA
CGGGAGTATCTGCCTCTTTGACAGAGCCTGCTCAAGTTGTCAGGGACACC
GATCTTTCTCCTGGACAACCCTTACAATCCAGTCAGCCTTCCGGTGGCCT
CGGTGTTATTGGCCGGCGAAGTGTTTCTGATCTTGGTGCCATTGGTGATA
GCCTGAGTGGAGCAACTGTGAGTTCCGGCGGCATGCATGATCAGATGTAC
AATATGCAGATGCTTGAATCTGCATTTTATAAACTTCCACAGCCAAAGGA
TTCAGAACGCGCCAGGAGCTACATTCCAAGACACCCTGCTGTAACACCTC
CTAGCTATCCTCAAGTTCAGGCACCCATTGTGAGTAACCCTGCTTTCTGG
GAACGATTGTCTCTGGACAGCTACGGTACCGATACACTGTTCTTTGCATT
TTACTACCAGCAGAATACTTACCAGCAATATTTGGCCGCTAAAGAGCTAA
AGAAGCAATCTTGGAGATACCACAGAAAATACAACACATGGTTCCAACGG
CATGAGGAGCCTAAAGTTGCCAATGATGAATTCGAACAGGGAACTTATGT
GTACTTTGACTTTCATATCGCCAATGATGATCTCCCACATGGATGGTGTC
AAAGGATCAAGACCGANGTCACTTTTGAGTATAACTACCTTGAAGATGAG
CTTATTGTATAGCGACTGAGTAGAAGATGCTANTAGATTGACCATGGNNC
AGCATAGAATTTGCAGCTGTACAATTTGATTTGATACACTGGTC
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