EY757070

Overview
NameEY757070
Unique NameEY757070
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY757070_ssr13 microsatellite EY757070_ssr13:13..28. BLAST: Citrus ESTs to Prunus persica proteins V1
EY757070_ssr790 microsatellite EY757070_ssr790:790..801. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY757070 vs. ExPASy Swiss-Prot
Match: GAT25_ARATH (GATA transcription factor 25 OS=Arabidopsis thaliana GN=TIFY2A PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 5.800e-11
Identity = 46/117 (39.32%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:  469 HLSYDPHSA--LENGIVVVEDVAHDS---GYATG---------GNELSN-----------SSQLTLSFRGQVYVFDSVTPDKVQAVLVLLGGCEL-SSSPQGMEVIPHSQRGIADYP 741
            H+ ++ H+   + NG  +V+D A D    G + G         GN   N             QLTLSF+GQVYVFDSV P+KVQAVL+LLGG EL  ++P G+   PH    ++  P
Sbjct:   21 HVQFEHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLG-SPHQNNRVSSLP 136

HSP 2 Score: 22.7126 bits (47), Expect = 5.800e-11
Identity = 14/31 (45.16%), Postives = 19/31 (61.29%), Query Frame = 3 
Query:  756 PTRAASLDRFXQKKKSXALIEK*N-SVRQEV 845
            P R ASL RF +K+K     +K   +VR+EV
Sbjct:  145 PQRLASLVRFREKRKGRNFDKKIRYTVRKEV 175
The following BLAST results are available for this feature:
BLAST of EY757070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GAT25_ARATH5.800e-1139.32GATA transcription factor 25 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-017-A07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757070 ID=EY757070; Name=EY757070; organism=Citrus sinensis; type=EST; length=867bp
CCACGCGTCCGTACACACACACACACACTGAAACAATCGCAGCCAACCTC
CAAACCTCGACAGCTGACACCTCCCTACCATCTCTCCGACAGCAACCACG
ACCTGCCGCTGCAGTGCTGACCGCACTTCCAACCCTCTGCGAGCCTCCTT
CGATCAGCTCTTCTCATTTGCCTCCACCCTGCCTCCAACCCTCCACAGCC
ATCATAGCTACTGTCTCCATCGTTCTGTCATCTTGTTAGTGGTAGCCACT
GAGCGATGGCAATTCCGCCATCACAGATTCACAGCCACGAGGGTTTCACT
CAAAATCTCCAAAAAGTTTTCCCTTTCGGTAATGCTTCGAAATCCCCTTC
ATTCGGCCCAATATCACCTATGTACGGTCAGTCGCAGTCAATGAACATCT
CCTCCCAAATGTCCGGTGGTGGTGCCGCCGCTGATGAAGACGACGTCTCT
GTTGCCGCCGATGATCACCATCTCAGCTACGACCCTCACTCGGCCCTCGA
AAACGGCATTGTCGTCGTCGAAGACGTTGCTCATGATTCCGGCTATGCTA
CCGGGGGCAACGAATTGTCTAATTCCAGCCAGCTCACTCTCTCCTTTCGC
GGCCAGGTCTATGTCTTTGATTCCGTCACGCCTGATAAGGTTCAAGCGGT
GCTNGTATTGTTGGGGGGATGCGAGTTATCTTCCAGTCCACAGGGCATGG
AAGTAATTCCTCACAGCCAGAGGGGTATTGCGGACTATCCTGCTAATGTA
CCCAACCCACAAGAGCAGCTTCATTAGATAGGTTTCNGCAGAAGAAGAAG
AGCNGTGCTTTGATAGAAAAGTAGAACAGTGTCCGGCAAGAGGTGCTCTC
GGATGCANCGAACAAGG
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