EY757043

Overview
NameEY757043
Unique NameEY757043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY757043_ssr260 microsatellite EY757043_ssr260:260..271. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13376 contig Csv1_Contig13376:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757043 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.969e-39
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 3
Query:  318 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNVERAPTL 575
            D EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G  ERAPTL
Sbjct:  195 DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280          
BLAST of EY757043 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 3
Query:  327 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 530
            DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct:  158 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 225          
BLAST of EY757043 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 3
Query:  327 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 530
            DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct:  186 DKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253          
BLAST of EY757043 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  309 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 530
            P  ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  193 PLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of EY757043 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  309 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 530
            P  + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  182 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of EY757043 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  309 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 530
            P  + ED L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of EY757043 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 3
Query:  327 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 530
            D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP ANN
Sbjct:  185 DPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANN 252          
BLAST of EY757043 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  309 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 530
            P  + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  182 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of EY757043 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  309 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 530
            P  ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL+DP ANN
Sbjct:  183 PLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 256          
BLAST of EY757043 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 3
Query:  309 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 530
            P  ++ D ++PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  189 PLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262          
The following BLAST results are available for this feature:
BLAST of EY757043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB26_ARATH1.969e-3990.70Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB25_SOLLC5.206e-2473.53Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC5.206e-2473.53Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB2A_PINSY6.799e-2470.27Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_ARATH6.799e-2470.27Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SINAL6.799e-2471.62Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_LEMGI6.799e-2475.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_ARATH6.799e-2470.27Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2_PHYPA8.880e-2470.27Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_PINSY8.880e-2468.92Chlorophyll a-b binding protein type 2 member 1B, ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-016-F11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757043 ID=EY757043; Name=EY757043; organism=Citrus sinensis; type=EST; length=714bp
CCACGCGTCCGATTCTAAAGTTACCAGTGTAGCGAATTTGATAATTATAG
TCATCATATATCATTTAGTTAAGCAAACACAAATAGTCAGTTAGTCGCGT
GCAAGGACTACATTCAATCTGCTTCCTTTCAAGCAAAGTGCAAAGTTCAA
ATTCAATTAAACGTTAAAAAATTACAAAAAACTTTAGAGGTGAAATTTCA
GAGTCTTTGAAAAGCTTAGGGATGAGTTTTGAGTTCCATTCGATATGTTC
TGGTAGATACATGCATGCATGGTTACCGAAACAAAAAAACTCAAACTCTG
TGCAATTTCCATCGTAGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCA
TTTGACCCACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAA
AGTGAAGGAGATCAAGAATGGAAGACTTGCAATGTTTGCCATGCTTGGTT
TCTTTCTCCAAGCTTATGTCACAGGTGAAGGTCCAGTTGAGAACCTTGCT
AAACATCTCAGTGATCCTTTTGCCAACAACTTGCTTACCGTGATCTCCGG
AAACGTAGAGAGAGCTCCCACCCTGTGATTTCAGTTGTTCTGATGTTCTT
TTCACTCGAATCTAAAATGCATTGTACATCTCATCATCAAGACATTTCCA
AGATGTTGAAACCTTAAATGATCATGGCACTCGAATCCCTACAAAAAAAA
AAAAAAAAAAAAAA
back to top