EY756995

Overview
NameEY756995
Unique NameEY756995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3611 contig Csv1_Contig3611:253..970. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756995 vs. ExPASy Swiss-Prot
Match: 3HIDH_ARATH (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.647e-31
Identity = 54/74 (72.97%), Postives = 65/74 (87.84%), Query Frame = 2
Query:  113 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYSKLCENGHDSKDFSCVFQHYYGGKDEV 334
            M+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG   PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct:  274 MKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347          

HSP 2 Score: 36.965 bits (84), Expect = 1.647e-31
Identity = 14/19 (73.68%), Postives = 18/19 (94.74%), Query Frame = 1
Query:   37 TLTKILNSSSARCWSSDSY 93
            TLT++LN+SS RCWSSD+Y
Sbjct:  249 TLTEVLNTSSGRCWSSDAY 267          
BLAST of EY756995 vs. ExPASy Swiss-Prot
Match: 3HIDH_RAT (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.882e-16
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 2
Query:  113 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYSKLCENGHDSKDFSCVFQH 310
            M+GVP+S NY GGF + LMAKDL LA  SA        L S A  IY  +C  G+  KDFS VFQ+
Sbjct:  263 MDGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQY 328          

HSP 2 Score: 35.039 bits (79), Expect = 9.882e-16
Identity = 17/30 (56.67%), Postives = 20/30 (66.67%), Query Frame = 1
Query:    4 LDPRVREYLFLTLTKILNSSSARCWSSDSY 93
            LDP++       L KILN SS RCWSSD+Y
Sbjct:  234 LDPKL-------LAKILNMSSGRCWSSDTY 256          
BLAST of EY756995 vs. ExPASy Swiss-Prot
Match: 3HIDH_BOVIN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.284e-15
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = 2
Query:  113 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYSKLCENGHDSKDFSCVFQ 307
            M+GVP++ NY GGF + LMAKDL LA  SA        L SQA  IY  +C  G+  KDFS VFQ
Sbjct:  264 MDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQ 328          

HSP 2 Score: 35.039 bits (79), Expect = 1.284e-15
Identity = 17/30 (56.67%), Postives = 20/30 (66.67%), Query Frame = 1
Query:    4 LDPRVREYLFLTLTKILNSSSARCWSSDSY 93
            LDP++       L KILN SS RCWSSD+Y
Sbjct:  235 LDPKL-------LAKILNMSSGRCWSSDTY 257          
BLAST of EY756995 vs. ExPASy Swiss-Prot
Match: 3HIDH_MOUSE (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.669e-15
Identity = 34/66 (51.52%), Postives = 39/66 (59.09%), Query Frame = 2
Query:  113 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYSKLCENGHDSKDFSCVFQH 310
            M GVP+S NY GGF + LMAKDL LA  SA        L S A  IY  +C  G+  KDFS VFQ+
Sbjct:  263 MHGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQY 328          

HSP 2 Score: 35.039 bits (79), Expect = 1.669e-15
Identity = 17/30 (56.67%), Postives = 20/30 (66.67%), Query Frame = 1
Query:    4 LDPRVREYLFLTLTKILNSSSARCWSSDSY 93
            LDP++       L KILN SS RCWSSD+Y
Sbjct:  234 LDPKL-------LAKILNMSSGRCWSSDTY 256          
BLAST of EY756995 vs. ExPASy Swiss-Prot
Match: 3HIDH_PONAB (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.037e-15
Identity = 33/65 (50.77%), Postives = 39/65 (60.00%), Query Frame = 2
Query:  113 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYSKLCENGHDSKDFSCVFQ 307
            M+GVP++ NY GGF + LMAKDL LA  SA        L S A  IY  +C  G+  KDFS VFQ
Sbjct:  264 MDGVPSANNYQGGFGATLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328          

HSP 2 Score: 35.039 bits (79), Expect = 8.037e-15
Identity = 17/30 (56.67%), Postives = 20/30 (66.67%), Query Frame = 1
Query:    4 LDPRVREYLFLTLTKILNSSSARCWSSDSY 93
            LDP++       L KILN SS RCWSSD+Y
Sbjct:  235 LDPKL-------LAKILNMSSGRCWSSDTY 257          
BLAST of EY756995 vs. ExPASy Swiss-Prot
Match: 3HIDH_HUMAN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 8.037e-15
Identity = 33/65 (50.77%), Postives = 39/65 (60.00%), Query Frame = 2
Query:  113 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYSKLCENGHDSKDFSCVFQ 307
            M+GVP++ NY GGF + LMAKDL LA  SA        L S A  IY  +C  G+  KDFS VFQ
Sbjct:  264 MDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328          

HSP 2 Score: 35.039 bits (79), Expect = 8.037e-15
Identity = 17/30 (56.67%), Postives = 20/30 (66.67%), Query Frame = 1
Query:    4 LDPRVREYLFLTLTKILNSSSARCWSSDSY 93
            LDP++       L KILN SS RCWSSD+Y
Sbjct:  235 LDPKL-------LAKILNMSSGRCWSSDTY 257          
BLAST of EY756995 vs. ExPASy Swiss-Prot
Match: 3HIDH_DICDI (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.541e-12
Identity = 31/64 (48.44%), Postives = 38/64 (59.38%), Query Frame = 2
Query:  113 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYSKLCENGHDSKDFSCVF 304
            +E  PASR Y GGF S LM KDL LA+ SAK +G    L + A  +Y+ L   G   KDFS V+
Sbjct:  247 IETSPASRGYTGGFGSALMTKDLGLAVDSAKSIGEPLLLGNSAHQLYTLLVAKGDGQKDFSVVY 310          

HSP 2 Score: 31.5722 bits (70), Expect = 2.541e-12
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1
Query:   40 LTKILNSSSARCWSSDSYTSC 102
            L  I N+SSARCW+S+ Y  C
Sbjct:  223 LAGIFNTSSARCWTSELYNPC 243          
The following BLAST results are available for this feature:
BLAST of EY756995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
3HIDH_ARATH1.647e-3172.97Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_RAT9.882e-1651.523-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_BOVIN1.284e-1552.313-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_MOUSE1.669e-1551.523-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_PONAB8.037e-1550.773-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_HUMAN8.037e-1550.773-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_DICDI2.541e-1248.44Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-016-A12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756995 ID=EY756995; Name=EY756995; organism=Citrus sinensis; type=EST; length=719bp
TTCCTCGACCCACGCGTCCGGGAATATCTGTTCCTCACTCTAACAAAGAT
ATTGAACTCTTCAAGTGCTCGCTGTTGGAGTAGTGACAGTTACACATCCT
GTTCCTGGGGTGATGGAAGGGGTGCCGGCTTCAAGGAATTATGGTGGTGG
GTTTGCATCTAAGCTCATGGCCAAAGACTTGAACCTTGCTTTGGCATCAG
CAAAAGAGGTTGGCGTCGATTGCCCGTTAACATCACAAGCACAAGACATA
TACTCGAAGCTCTGTGAGAATGGACATGATTCCAAGGACTTCTCCTGCGT
TTTCCAGCATTATTATGGAGGCAAGGATGAAGTTTATCTTCAACATTCAA
GGACACTGCTTTTACAAATCCATTCTGATTCTCTTGTAAAATCAAAGCGC
ATTCAATCAAAATTAGCTCCCTAAAGCTCGTCCCTTTTCACAGAATAAAT
TGCAGCTAATAAAATCTTTTTCAGTTATATGAATATTTACCCATGAAGAG
ATAGAGATAGAGAATCATGTAATATGCATGTTGGAAAGCCATTAAGCCAA
TGTGCTTTTCTTGTCCATTGCCGAGGGAAATCTTTCTTTTTCCCTTTCTC
TTATTCTTTTTTAATAATCTCAAACCAAGAAAAATGAAGACAGTATGATA
AACGATAGCGTGTATCGTGTGTCAGAGGAAGGTGAATCTTCGGATAATGA
TGAAGATGAGAACAAGCGG
back to top