EY756977

Overview
NameEY756977
Unique NameEY756977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:366..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756977 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 9.230e-66
Identity = 118/158 (74.68%), Postives = 134/158 (84.81%), Query Frame = 2
Query:   11 ELREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLSYTQYFAESLITEAETDDKIVAIHAAMGGGTGLNYFQKRF 484
            ELRE AK +TKQIGG  HE+AAKVDEYARG+IS SGST FEELGLYYIGPVDGHN++DL+TI + VK     GPVLIHVVTEKG+GYP AE AAD+ HGV KFDP TGKQFK+ + TLSYT YFAE+LI EAE D+++VAIHAAMGGGTGLNYF +RF
Sbjct:  278 ELREVAKGVTKQIGGSVHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLITILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVAKFDPATGKQFKSPAKTLSYTNYFAEALIAEAEQDNRVVAIHAAMGGGTGLNYFLRRF 435          
BLAST of EY756977 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 3.629e-62
Identity = 114/158 (72.15%), Postives = 129/158 (81.65%), Query Frame = 2
Query:   11 ELREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLSYTQYFAESLITEAETDDKIVAIHAAMGGGTGLNYFQKRF 484
            ELRE AK +TKQIGG  HE+AAKVDEYARG+IS SGST FEELGLYYIGPVDGHN++DL++I + V+     GPVLIHVVTEKG+GYP AE AAD+ HGV KFDP TGKQFK  + T SYT YFAE+LI EAE D  IVAIHAAMGGGTG+N F +RF
Sbjct:  281 ELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLISILKEVRSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVAKFDPATGKQFKGSAKTQSYTTYFAEALIAEAEADKDIVAIHAAMGGGTGMNLFLRRF 438          
BLAST of EY756977 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 6.191e-62
Identity = 113/158 (71.52%), Postives = 130/158 (82.28%), Query Frame = 2
Query:   11 ELREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLSYTQYFAESLITEAETDDKIVAIHAAMGGGTGLNYFQKRF 484
            ELRE AK +TKQIGG  H++AAKVDEYARG+IS +GS+ FEELGLYYIGPVDGHN++DLV I + VK     GPVLIHVVTEKG+GYP AE A D+ HGVVKFDP TG+QFKT + T SYT YFAE+L+ EAE D  +VAIHAAMGGGTGLN FQ+RF
Sbjct:  282 ELREVAKGMTKQIGGPMHQLAAKVDEYARGMISGTGSSLFEELGLYYIGPVDGHNIDDLVAILKEVKSTRTTGPVLIHVVTEKGRGYPYAERADDKYHGVVKFDPATGRQFKTTNKTQSYTTYFAEALVAEAEVDKDVVAIHAAMGGGTGLNLFQRRF 439          
BLAST of EY756977 vs. ExPASy Swiss-Prot
Match: DXS_NITWN (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dxs PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.172e-42
Identity = 86/157 (54.78%), Postives = 111/157 (70.70%), Query Frame = 2
Query:   14 LREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLSYTQYFAESLITEAETDDKIVAIHAAMGGGTGLNYFQKRF 484
            LREAAK + K +     + A +V+EY+RG ++ SG T FEELG YY+GP+DGHN++ L+ + + V++M   GP+L+HVVT+KGKGYPPAEAAAD+ H VVKFD  TG Q K+K    SY   F  SL+ EAE DDKIVAI AAM  GTG++ F   F
Sbjct:  231 LREAAKQLGKHLPKMIADRAERVEEYSRGFMTNSG-TLFEELGFYYVGPIDGHNLDHLLPVLKNVRDMEN-GPILVHVVTQKGKGYPPAEAAADKYHAVVKFDISTGAQSKSKPNAPSYQNVFGASLVKEAEKDDKIVAITAAMPSGTGVDIFNNAF 385          
BLAST of EY756977 vs. ExPASy Swiss-Prot
Match: DXS_RHOP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=dxs PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.214e-41
Identity = 88/157 (56.05%), Postives = 108/157 (68.79%), Query Frame = 2
Query:   14 LREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLSYTQYFAESLITEAETDDKIVAIHAAMGGGTGLNYFQKRF 484
            LREA K I K +     + AA+ +EY+RG +   G T FEELG YY+GP+DGHN++ L+ I Q V++  A GP LIHVVT+KGKGY PAEAAAD+ H VVKFD  TG Q KTKS   SY   F  SL+ EA+ DDKIV I AAM  GTG++ F+K F
Sbjct:  207 LREAGKQIGKHLPKLIADRAARAEEYSRGFMMGGG-TLFEELGFYYVGPIDGHNLDHLLPILQNVRDADA-GPFLIHVVTQKGKGYAPAEAAADKYHAVVKFDIATGTQAKTKSNAPSYQNVFGASLVKEAQKDDKIVGITAAMPSGTGIDIFEKAF 361          
BLAST of EY756977 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.214e-41
Identity = 85/157 (54.14%), Postives = 110/157 (70.06%), Query Frame = 2
Query:   14 LREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLSYTQYFAESLITEAETDDKIVAIHAAMGGGTGLNYFQKRF 484
            LRE  K +   +     + AAK +E+ARG  +  G T FEE+G YY+GP+DGHN+E L+ + + V++    GP+L+HVVT+KGKGYPPAEA+AD+ HGVVKFD  TG Q K KS   SYT+ FAE+LI EA  DDK+VAI AAM  GTGL+ F + F
Sbjct:  206 LREIGKQLAGHLPKFVKDGAAKAEEFARGFWT--GGTLFEEMGFYYVGPIDGHNLEHLLPVLKNVRDAKT-GPILVHVVTQKGKGYPPAEASADKYHGVVKFDVVTGAQVKAKSNAPSYTRVFAETLIDEARRDDKVVAITAAMPSGTGLDLFGQAF 359          
BLAST of EY756977 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.585e-41
Identity = 79/157 (50.32%), Postives = 110/157 (70.06%), Query Frame = 2
Query:   14 LREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLSYTQYFAESLITEAETDDKIVAIHAAMGGGTGLNYFQKRF 484
            LRE  K + +++     E A + +EYARG ++  G T FEE+G YY+GP+DGHN++ L+ + + +++    GPVLIH VT+KG+GY PAE +AD++H V KFD  TG Q K K+   SYT+ FA+SLI EAE D ++VAI AAM  GTGL+ F+KRF
Sbjct:  207 LRELGKQVAERLPRPLQEAARRAEEYARGFVT--GGTLFEEMGFYYVGPIDGHNLDHLLPVLENIRDDQGTGPVLIHAVTQKGRGYGPAERSADKLHAVSKFDVITGAQAKAKANAPSYTRVFADSLIQEAEADSRVVAITAAMPSGTGLDLFEKRF 361          
BLAST of EY756977 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.532e-41
Identity = 84/157 (53.50%), Postives = 111/157 (70.70%), Query Frame = 2
Query:   14 LREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLSYTQYFAESLITEAETDDKIVAIHAAMGGGTGLNYFQKRF 484
            LREAAK + K +     + A +V+EY+RG +  SG T FEELG YY+GP+DGHN++ L+ + + V++M   GP+L+HVVT+KGKGY PAEAAAD+ H VVKFD  TG Q K+K    +Y   F +SL+ EAE DDKI+AI AAM  GTG++ F K F
Sbjct:  233 LREAAKQLGKHLPKMIADRAERVEEYSRGFMVNSG-TLFEELGFYYVGPIDGHNLDHLLPVLKNVRDMEN-GPILLHVVTQKGKGYGPAEAAADKYHAVVKFDVSTGAQSKSKPNAPAYQNVFGQSLVKEAEKDDKIIAITAAMPSGTGVDIFNKAF 387          
BLAST of EY756977 vs. ExPASy Swiss-Prot
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.024e-41
Identity = 87/157 (55.41%), Postives = 107/157 (68.15%), Query Frame = 2
Query:   14 LREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLSYTQYFAESLITEAETDDKIVAIHAAMGGGTGLNYFQKRF 484
            LREA K I K +     + AA+ +EY+RG +   G T FEELG YY+GPVDGHN++ L+ I Q V++    GP LIHVVT+KGKGY PAEAAAD+ H VVKFD  TG Q K KS   SY   F +SL+ EA+ DDKIV I AAM  GTG++ F+K F
Sbjct:  207 LREAGKQIGKHLPKLIADRAARAEEYSRGFMMGGG-TLFEELGFYYVGPVDGHNLDHLLPILQNVRDADT-GPFLIHVVTQKGKGYGPAEAAADKYHAVVKFDIATGAQAKAKSNAPSYQNVFGQSLVKEAQKDDKIVGITAAMPSGTGIDIFEKAF 361          
BLAST of EY756977 vs. ExPASy Swiss-Prot
Match: DXS_RHOPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris GN=dxs PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.024e-41
Identity = 87/157 (55.41%), Postives = 107/157 (68.15%), Query Frame = 2
Query:   14 LREAAKSITKQIGGQTHEVAAKVDEYARGLISASGSTFFEELGLYYIGPVDGHNVEDLVTIFQRVKEMPAPGPVLIHVVTEKGKGYPPAEAAADRMHGVVKFDPKTGKQFKTKSPTLSYTQYFAESLITEAETDDKIVAIHAAMGGGTGLNYFQKRF 484
            LREA K I K +     + AA+ +EY+RG +   G T FEELG YY+GPVDGHN++ L+ I Q V++    GP LIHVVT+KGKGY PAEAAAD+ H VVKFD  TG Q K KS   SY   F +SL+ EA+ DDKIV I AAM  GTG++ F+K F
Sbjct:  207 LREAGKQIGKHLPKLIADRAARAEEYSRGFMMGGG-TLFEELGFYYVGPVDGHNLDHLLPILQNVRDADT-GPFLIHVVTQKGKGYGPAEAAADKYHAVVKFDIATGAQAKAKSNAPSYQNVFGQSLVKEAQKDDKIVGITAAMPSGTGIDIFEKAF 361          
The following BLAST results are available for this feature:
BLAST of EY756977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ORYSJ9.230e-6674.68Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN3.629e-6272.15Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH6.191e-6271.52Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_NITWN4.172e-4254.781-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_RHOP51.214e-4156.051-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_AZOC51.214e-4154.141-deoxy-D-xylulose-5-phosphate synthase OS=Azorhiz... [more]
DXS_RHOCS1.585e-4150.321-deoxy-D-xylulose-5-phosphate synthase OS=Rhodosp... [more]
DXS_NITHX3.532e-4153.501-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_RHOPT6.024e-4155.411-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPA6.024e-4155.411-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-015-H03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756977 ID=EY756977; Name=EY756977; organism=Citrus sinensis; type=EST; length=486bp
CCACGCGTCCGAACTTCGTGAAGCCGCAAAAAGCATCACTAAGCAAATTG
GTGGGCAAACACATGAAGTTGCTGCAAAGGTCGATGAGTACGCCAGAGGA
CTGATTAGTGCTTCTGGTTCAACTTTCTTTGAGGAGCTAGGTCTGTACTA
CATTGGTCCAGTGGATGGACACAATGTCGAAGATTTAGTTACTATCTTTC
AGAGAGTGAAAGAAATGCCTGCGCCAGGGCCAGTTCTGATCCATGTTGTA
ACAGAGAAGGGAAAGGGCTATCCCCCAGCGGAGGCAGCAGCTGATAGAAT
GCATGGAGTTGTCAAGTTCGATCCAAAAACTGGCAAGCAATTTAAGACCA
AATCCCCTACGCTCTCGTATACACAGTACTTTGCTGAATCTTTGATAACG
GAAGCTGAGACAGACGATAAGATTGTGGCCATCCACGCTGCAATGGGTGG
TGGTACTGGCCTCAATTATTTCCAGAAAAGGTTTCC
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