EY756967

Overview
NameEY756967
Unique NameEY756967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY756967 vs. ExPASy Swiss-Prot
Match: FB140_ARATH (F-box protein At3g12350 OS=Arabidopsis thaliana GN=At3g12350 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.736e-31
Identity = 70/179 (39.11%), Postives = 88/179 (49.16%), Query Frame = 2 
Query:   11 ARVSPSHDGTCNVLKSPFLWMSLSPDGEMVNFLQ-PNGEIKLWDDFFKCCQLGFVEDFVSVNVNFMGGCHVLVEENYSSFYPEYRSIVLGKSPSLLNLNSRTEDGGEGSSEECLVT-----EMYTQLANKISPGGXXXXXXXXXXXXXXXXXXXXXPEHFVKIVDFSPTPARPLQGLWK 529
            +RV  + D T  V K+PFL M +SP+G   NFL    G ++  DD  K  +L    + VSV+VNFMG  H++VEEN                    N N R +    G   + L++     EMYTQLANK SPGG                     PEHF+K+ D SPTP RPLQGLWK
Sbjct:  118 SRVLSTGDDTYEVKKTPFLLMGISPEGRSENFLDLVGGNLRSVDDDLK--ELEASNNLVSVDVNFMGNGHIMVEENRC----------------FTNNNRREDQRSSGDESDDLISSPNFSEMYTQLANKTSPGGDRRRQKRKEKERQASRTKWE-PEHFLKVADCSPTPTRPLQGLWK 277

HSP 2 Score: 51.2174 bits (121), Expect = 3.736e-31
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 3 
Query:  603 QGICDDINLDFYLVAYD-AGGIICRKVSDLS-SGSAAPVVWTSNTTLIKFPISPNEE 767
            +G C+  +++ YLV YD  GGIICRKV DLS S    PV WT   T I+ P S  EE
Sbjct:  277 KGFCEG-SIELYLVKYDEVGGIICRKVEDLSLSRYTPPVFWTPKHTFIRSPFSAEEE 332
The following BLAST results are available for this feature:
BLAST of EY756967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB140_ARATH3.736e-3139.11F-box protein At3g12350 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-015-G03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756967 ID=EY756967; Name=EY756967; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGCTAGGGTTTCCCCCTCCCATGACGGCACTTGCAATGTCT
TAAAGTCTCCGTTTTTATGGATGAGTTTGAGTCCCGATGGGGAAATGGTT
AATTTTCTCCAACCTAATGGGGAAATTAAATTGTGGGACGATTTTTTCAA
ATGTTGTCAGCTGGGATTTGTTGAGGATTTTGTCTCAGTGAATGTTAATT
TCATGGGGGGCTGTCATGTTCTTGTCGAGGAAAATTATTCTAGTTTTTAT
CCAGAATATAGAAGCATTGTGTTGGGAAAGAGTCCAAGCTTATTGAATCT
GAATTCGAGAACAGAAGATGGCGGTGAGGGGAGTTCAGAGGAGTGTTTGG
TAACGGAAATGTATACGCAATTGGCGAATAAGATATCCCCAGGCGGGGAG
AGGGCATGGAGGAAACAGAGGAAGAAAGAGAAGGAAAGGCAGGGCAGAAG
GAGGTGGGAGCCTGAACATTTTGTGAAGATCGTAGATTTCTCGCCCACTC
CTGCCCGCCCTTTGCAGGGTTTATGGAAGTTAGTTGGAAGACGGTGATGT
GCCTCAATTCTACATCACAGCTCGTTTGACCTCTTTAACCGGCATCATAT
TGCAGGGAATATGTGATGATATTAACTTGGATTTTTATCTTGTGGCATAT
GATGCTGGGGGCATTATCTGCAGAAAGGTTAGTGACTTATCTTCTGGNTC
TGCTGCACCAGTGGTTTGGACGTCAAATACTACATTAATCAAGTTTCCCA
TTTCACCAAATGAAGAATATTATATGATAGTCGCGTACATCGCCGTGCGC
TTGCAGCAGAAATCCAATACATTGCCACACCCATGNAGAGAGAAAAAAGA
TGAGGTGCCTCTCCCATATGTACATAACTCAGGTATGATCTAGTA
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