EY756964

Overview
NameEY756964
Unique NameEY756964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756964 vs. ExPASy Swiss-Prot
Match: TYRA1_ARATH (Arogenate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.655e-21
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 3
Query:  249 HLITQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRI----RDEATCSSFLRIFESE 419
            +L  Q LP++ D+LCTHPMFGPESG+NGW + AFV++KVRI    R ++ C+SFL IF  E
Sbjct:  463 NLFLQTLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGMDDRRKSRCNSFLDIFARE 523          

HSP 2 Score: 43.5134 bits (101), Expect = 9.655e-21
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1
Query:   88 EVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQ 186
            +VL SLP   L+R TL  DVLSVKE+PRN+ LQ
Sbjct:  435 KVLESLPFQRLKRSTLFVDVLSVKEFPRNLFLQ 467          

HSP 3 Score: 68.5514 bits (166), Expect = 5.933e-16
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  252 LITQVLPEEMDVLCTHPMFGPE--SGQNGWKDFAFVYEKVRIRDE----ATCSSFLRIFESE 419
            L+ Q LPE+ D+LCTHPMFGP+  S  +GW+   FVY+KVRI +E    + C SFL IF  E
Sbjct:  152 LLLQYLPEDFDILCTHPMFGPQSVSSNHGWRGLRFVYDKVRIGEERLRVSRCESFLEIFVRE 213          

HSP 4 Score: 36.965 bits (84), Expect = 5.933e-16
Identity = 17/32 (53.12%), Postives = 23/32 (71.88%), Query Frame = 1
Query:   91 VLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQ 186
            +L +LP   L+R TL  DVLSVKE+ + +LLQ
Sbjct:  124 ILKTLPFQRLRRNTLFVDVLSVKEFAKTLLLQ 155          

HSP 5 Score: 74.7146 bits (182), Expect = 8.054e-13
Identity = 32/52 (61.54%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  629 GCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLV 784
            GC+M+EMSC EHD  AA SQF+THT+GR+L +L ++ST ++TKG+ETL++LV
Sbjct:  524 GCRMVEMSCAEHDWHAAGSQFITHTVGRLLEKLSLESTPIDTKGYETLLKLV 575          

HSP 6 Score: 68.1662 bits (165), Expect = 7.538e-11
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  629 GCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRL 781
            GC+M+EMS  +HDK AA+SQF+THT+GR+L  L++ ST +NTKG+E L+ L
Sbjct:  214 GCEMVEMSVTDHDKFAAESQFITHTLGRLLGMLKLISTPINTKGYEALLDL 264          
BLAST of EY756964 vs. ExPASy Swiss-Prot
Match: TYRA2_ARATH (Arogenate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.353e-18
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  252 LITQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEAT----CSSFLRIFESEVIKI 431
            L  + LP+E D+LCTHPMFGPESG++ W    FVY+KVRI D A+    C  FLRIFE+E  K+
Sbjct:  158 LFIKYLPKEFDILCTHPMFGPESGKHSWSGLPFVYDKVRIGDAASRQERCEKFLRIFENEGCKM 221          

HSP 2 Score: 35.039 bits (79), Expect = 5.353e-18
Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = 1
Query:   91 VLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQ 186
            VL S P   L+R TL  DVLSVKE+P+ + ++
Sbjct:  130 VLRSFPFQRLRRSTLFVDVLSVKEFPKALFIK 161          

HSP 3 Score: 74.3294 bits (181), Expect = 1.052e-12
Identity = 33/52 (63.46%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  629 GCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLV 784
            GCKM+EMSCE+HD  AA SQF+THT+GRVL +  ++S+ +NTKG+ETL+ LV
Sbjct:  218 GCKMVEMSCEKHDYYAAGSQFVTHTMGRVLEKYGVESSPINTKGYETLLDLV 269          
The following BLAST results are available for this feature:
BLAST of EY756964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TYRA1_ARATH9.655e-2157.38Arogenate dehydrogenase 1, chloroplastic OS=Arabid... [more]
TYRA2_ARATH5.353e-1856.25Arogenate dehydrogenase 2, chloroplastic OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-015-F11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756964 ID=EY756964; Name=EY756964; organism=Citrus sinensis; type=EST; length=906bp
TTCGTCGACCCACGCGTCCGCAAACGTGCATTTCTTGAAGCTGATAACGA
TGTCATATTGATATCCACATCTATTCTGTCACTATCTGAGGTCCTCAACT
CTTTGCCAGTCCATTGCCTTCAGCGACGCACGCTCATAGCCGATGTTCTT
TCTGTCAAAGAATATCCAAGAAATGTTCTATTGCAAGTAAACAGTGATAC
CCAGTAAAGCTATACAATTTTTATTGAACAAGTAGCAATCATGTGTACCA
TTTGATTACTCAGGTTTTGCCAGAGGAGATGGATGTGCTTTGTACTCATC
CAATGTTCGGTCCGGAGAGTGGACAAAATGGGTGGAAAGATTTCGCTTTC
GTGTATGAAAAAGTTCGGATAAGGGATGAAGCTACATGCTCGAGCTTCCT
TCGTATATTTGAAAGCGAGGTAATTAAGATAACTGTTTGTTTTCTTTCAC
TTTCAGGCAATCCTAAAAGCACCTGTCTACAGAATAAATGCAGGGTATCA
TAATATATCTATTATTCAATCAGGAAAGCCAAAACAACCTAAAAGCACTT
CTTAGAAAAGCAGTTCATATGCTTTTTCCAAAAGCTAAAAAATTATTTTG
ATGGAATTTACTCTGGAATTTACACTAGGGCTGCAAAATGCTGGAAATGT
CTTGTGAAGAGCATGATAAAGTGGCTGCTAAGAGTCAATTTCTAACTCAC
ACAATAGGCAGGGTTTTGTCAGAACTGGAGATTCAGTCCACATCTATGAA
TACAAAGGGCTTCGAGACGCTTATTCGATTGGTATGCTCATTGAAACCTT
TAATATAATTCTTTTCTCTACGTTCTTAGCGACCACAGAAGCTTAATGAT
ATACGATNAAGAGAGCACAGAGCACTAAATTTAACTATTTGCAGAAGAGA
GCTCTG
back to top