EY756952

Overview
NameEY756952
Unique NameEY756952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756952_ssr559 microsatellite EY756952_ssr559:559..578. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1249 contig Csv1_Contig1249:192..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756952 vs. ExPASy Swiss-Prot
Match: GDAP2_DANRE (Ganglioside-induced differentiation-associated protein 2 OS=Danio rerio GN=gdap2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.468e-11
Identity = 40/139 (28.78%), Postives = 71/139 (51.08%), Query Frame = 3 
Query:    6 RPILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 413
            R ++ ++G+  P  L+ +E    Y    V   +  K + ++Y HT +    N      L+ +YD + A  K+NL+A YFVHP  ++++   F  TF       V GL  K+ ++  L  L+  V   +++IP FV+++D
Sbjct:  359 RTVMVVVGRNIPVMLIDMEKALLYFIH-VMDHITVKEYVMVYFHT-LTGEHNHLDTDFLKKLYDIVDAKFKKNLRAFYFVHPTFRSKVSTWFFTTF------SVSGLKDKVHHIENLQQLFTCVLPEQIDIPPFVLEYD 489
[Close]
BLAST of EY756952 vs. ExPASy Swiss-Prot
Match: GDAP2_XENTR (Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 41/139 (29.50%), Postives = 71/139 (51.08%), Query Frame = 3 
Query:    6 RPILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 413
            R ++ ++G+  P  L+ +E    Y    +   +  K + ++Y HT +    N      L+++YD +    K+NL+A+YFVHP  ++++   F  TF       V GL  K+  V  L  L+  V   ++EIP FV+D+D
Sbjct:  349 RTVMVVVGRNIPVLLIDMEKALLYFIHMM-DHVAAKEYVLVYFHT-LTGEHNHPDSDFLKNMYDIVDVKYKKNLKALYFVHPTFRSKVSSWFFTTF------TVSGLKDKVHQVESLHQLFSAVPPEQIEIPPFVLDYD 479
[Close]
BLAST of EY756952 vs. ExPASy Swiss-Prot
Match: GDAP2_RAT (Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 38/139 (27.34%), Postives = 70/139 (50.36%), Query Frame = 3 
Query:    6 RPILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 413
            R ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  TF       V GL  K+ +V+ L  L+  +   +++ P FV+++D
Sbjct:  350 RTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTF------SVSGLKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYD 480
[Close]
BLAST of EY756952 vs. ExPASy Swiss-Prot
Match: GDAP2_MOUSE (Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 38/139 (27.34%), Postives = 70/139 (50.36%), Query Frame = 3 
Query:    6 RPILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 413
            R ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  TF       V GL  K+ +V+ L  L+  +   +++ P FV+++D
Sbjct:  351 RTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSDYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTF------SVSGLKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYD 481
[Close]
BLAST of EY756952 vs. ExPASy Swiss-Prot
Match: GDAP2_MACFA (Ganglioside-induced differentiation-associated protein 2 OS=Macaca fascicularis GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 38/139 (27.34%), Postives = 70/139 (50.36%), Query Frame = 3 
Query:    6 RPILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 413
            R ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  TF       V GL  K+ +V+ L  L+  +   +++ P FV+++D
Sbjct:  314 RTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF------SVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYD 444
[Close]
BLAST of EY756952 vs. ExPASy Swiss-Prot
Match: GDAP2_HUMAN (Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 38/139 (27.34%), Postives = 70/139 (50.36%), Query Frame = 3 
Query:    6 RPILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 413
            R ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  TF       V GL  K+ +V+ L  L+  +   +++ P FV+++D
Sbjct:  350 RTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF------SVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYD 480
[Close]
BLAST of EY756952 vs. ExPASy Swiss-Prot
Match: GDAP2_BOVIN (Ganglioside-induced differentiation-associated protein 2 OS=Bos taurus GN=GDAP2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 38/139 (27.34%), Postives = 70/139 (50.36%), Query Frame = 3 
Query:    6 RPILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFGRLFFNGVGGLYGKLRYVNRLDYLWEHVRRHEVEIPEFVMDHD 413
            R ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  TF       V GL  K+ +V+ L  L+  +   +++ P FV+++D
Sbjct:  350 RTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF------SVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYD 480
The following BLAST results are available for this feature:
BLAST of EY756952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GDAP2_DANRE4.468e-1128.78Ganglioside-induced differentiation-associated pro... [more]
GDAP2_XENTR7.621e-1129.50Ganglioside-induced differentiation-associated pro... [more]
GDAP2_RAT9.953e-1127.34Ganglioside-induced differentiation-associated-pro... [more]
GDAP2_MOUSE9.953e-1127.34Ganglioside-induced differentiation-associated pro... [more]
GDAP2_MACFA9.953e-1127.34Ganglioside-induced differentiation-associated pro... [more]
GDAP2_HUMAN9.953e-1127.34Ganglioside-induced differentiation-associated pro... [more]
GDAP2_BOVIN9.953e-1127.34Ganglioside-induced differentiation-associated pro... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-015-E09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756952 ID=EY756952; Name=EY756952; organism=Citrus sinensis; type=EST; length=771bp
CCACGCGTCCGATTCTTCGTATCATAGGAAAATTCTTTCCCGCGCGGCTT
CTGAGCGTTGAAGTGCTGAAGAGGTATTTGTCGGAGAGGGTGTATCCAAG
ATTGGGGAAGAAGGCGTTTACGGTGTTGTACGTTCACACAGGAGTGCAGA
GAAGCGAGAACTTTGCTGGAATCTCGGCCCTTCGATCAATCTATGATGCT
ATTCCCGCCAATGTCAAGGAAAATCTCCAGGCCGTTTATTTTGTTCATCC
TGGCTTGCAGGCTCGTCTCTTTCTTGCCACCTTTGGCCGCCTTTTCTTCA
ACGGAGTCGGCGGGTTGTACGGGAAGCTGAGGTATGTGAACAGGCTTGAT
TACTTGTGGGAGCACGTGAGGAGGCACGAGGTCGAGATTCCAGAATTTGT
GATGGATCACGATGAGGATTTGGAGTACCGTCCGATGATGGATTATGGTT
TGGAGAGCGATCACCGCAGAGTCTACGGTGCGCCCGCAGTGGACTCGCCA
GCGTTATCTATTTACTCCATGAGGTGTATCTCCTGATGATGATCCCGTCC
GATGGCCCGCTTGCTTGCTTGCTTGCTTGCTGAGGCCTCCATTAGTGTTT
AGTGACGTGTGTGTTCTTCTTTTACTTTTTCTTATGAATAACTTTTTCAG
AGGGAGATGTTCGGTTACTCATTAGTTTCAAGTTTGTGAATATTGATTGT
AAATTAAGAGGATGAAGATGCCAATCGAACTCGAATGGCATGTTGTGATT
TAACAAAAAAAAAAAAAAAAA
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