EY756898

Overview
NameEY756898
Unique NameEY756898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756898_ssr545 microsatellite EY756898_ssr545:545..556. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2478 contig Csv1_Contig2478:156..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756898 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.080e-39
Identity = 84/117 (71.79%), Postives = 94/117 (80.34%), Query Frame = 3 
Query:   12 PLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 362
            PLAD+ LT T+LDLVQQAANYKQL+KGANEATKTLNRGI+EFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIAC+VT  E SQLK QIQ L+ +IE+LL+
Sbjct:   12 PLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQQSIERLLV 128
[Close]
BLAST of EY756898 vs. ExPASy Swiss-Prot
Match: NH2L1_XENLA (NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.080e-39
Identity = 84/117 (71.79%), Postives = 94/117 (80.34%), Query Frame = 3 
Query:   12 PLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 362
            PLAD+ LT T+LDLVQQ+ANYKQL+KGANEATKTLNRGI+EFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ AIE+LL+
Sbjct:   12 PLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQQAIERLLV 128
[Close]
BLAST of EY756898 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.406e-39
Identity = 86/117 (73.50%), Postives = 94/117 (80.34%), Query Frame = 3 
Query:   12 PLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 362
            PLADS LT  ILDLVQQA++YKQL+KGANEATKTLNRGISEFIVMAADT             EDKNVPYVFVPSK ALGRACGV+RPVI+ S+T+NEAS L  QIQ +K AIEKLLI
Sbjct:    9 PLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125
[Close]
BLAST of EY756898 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.104e-39
Identity = 83/117 (70.94%), Postives = 93/117 (79.49%), Query Frame = 3 
Query:   12 PLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 362
            PLAD+NL+  ++DLVQQA NYKQLKKGANEATKTLNRGISE IVMAAD              EDKNVPYVFV SK ALGRACGVTRPVIA S+T NE SQLK+QIQ++K+ +EKLLI
Sbjct:   12 PLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKLLI 128
[Close]
BLAST of EY756898 vs. ExPASy Swiss-Prot
Match: NH2L1_RAT (NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 159.844 bits (403), Expect = 9.142e-39
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3 
Query:   12 PLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 362
            PLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   12 PLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of EY756898 vs. ExPASy Swiss-Prot
Match: NH2L1_MOUSE (NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 159.844 bits (403), Expect = 9.142e-39
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3 
Query:   12 PLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 362
            PLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   12 PLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of EY756898 vs. ExPASy Swiss-Prot
Match: NH2L1_MACFA (NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2L1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.142e-39
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3 
Query:   12 PLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 362
            PLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   12 PLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of EY756898 vs. ExPASy Swiss-Prot
Match: NH2L1_HUMAN (NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 9.142e-39
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3 
Query:   12 PLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 362
            PLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   12 PLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of EY756898 vs. ExPASy Swiss-Prot
Match: NH2L1_BOVIN (NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 9.142e-39
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3 
Query:   12 PLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 362
            PLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   12 PLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of EY756898 vs. ExPASy Swiss-Prot
Match: SNU13_YARLI (13 kDa ribonucleoprotein-associated protein OS=Yarrowia lipolytica GN=SNU13 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.537e-38
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 3 
Query:   12 PLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 362
            PLAD+ LT  ILD+VQQA + +QLKKGANEATKTLNRGISEFI+MAAD              EDKNVPY+FVPSK ALGRACGV+RPVI+ SVTSN+ASQLK QI Q+KD IE+LLI
Sbjct:   10 PLADAALTQQILDIVQQATHLRQLKKGANEATKTLNRGISEFIIMAADAEPIEILLHLPLLCEDKNVPYIFVPSKVALGRACGVSRPVISASVTSNDASQLKDQIIQMKDKIERLLI 126
The following BLAST results are available for this feature:
BLAST of EY756898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
NH2L1_XENTR1.080e-3971.79NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l... [more]
NH2L1_XENLA1.080e-3971.79NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE... [more]
SNU13_SCHPO2.406e-3973.5013 kDa ribonucleoprotein-associated protein OS=Sch... [more]
NH2L1_CAEEL4.104e-3970.94NHP2-like protein 1 homolog OS=Caenorhabditis eleg... [more]
NH2L1_RAT9.142e-3970.09NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1... [more]
NH2L1_MOUSE9.142e-3970.09NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2... [more]
NH2L1_MACFA9.142e-3970.09NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2... [more]
NH2L1_HUMAN9.142e-3970.09NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1... [more]
NH2L1_BOVIN9.142e-3970.09NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 S... [more]
SNU13_YARLI4.537e-3870.0913 kDa ribonucleoprotein-associated protein OS=Yar... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-H08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756898 ID=EY756898; Name=EY756898; organism=Citrus sinensis; type=EST; length=598bp
CCACGCGTCCGCCGCTAGCAGATTCTAATCTCACAATCACGATACTGGAT
CTCGTTCAGCAAGCTGCCAATTACAAGCAGCTCAAAAAGGGCGCCAATGA
AGCTACTAAGACTCTTAACAGAGGTATCTCCGAGTTTATTGTGATGGCTG
CTGATACCGAGCCTCTGGAGATTCTTCTTCATCTTCCACTGCTTGCAGAG
GACAAGAATGTTCCCTATGTTTTTGTCCCTTCAAAGCAGGCTCTTGGCAG
GGCATGTGGGGTCACAAGACCTGTCATTGCTTGCTCTGTGACCTCAAATG
AGGCGAGTCAGTTGAAGACTCAAATTCAACAGCTGAAGGATGCCATTGAG
AAGCTCTTGATATGAATATAATGGGATTCATATTCGGTGTGATGGGCCTC
TTTGATGGTGGTTAGAGGCTTTGACTGATGGTGTAGTTGTGCTGCTTGGA
AATCTTCTATTATTAATCTTTGTATTTTTGTCTTTTATGTTTTCTTGTCA
TGCATTATGGGAAAGCTTTTGGAATCATATTTACCAGAACCTGCAATGAA
TGAATGATGCTACAAACAATGGTTATAACTGTGTTTNNNANNAAANAA
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