EY756882

Overview
NameEY756882
Unique NameEY756882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.935e-50
Identity = 94/123 (76.42%), Postives = 107/123 (86.99%), Query Frame = 1
Query:   61 LGEAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIKS 429
            LGE MDLMTALQ+V+ KS AH GL +GL E AK IEKHAAQLCVLAEDC+QPDYVKLVKALCA+HNV L+TVPSA TLGEWAGLCKID+ G A KV GCSC+VV D+GEES+GLN+V Q++KS
Sbjct:   20 LGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKS 142          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.154e-46
Identity = 87/122 (71.31%), Postives = 103/122 (84.43%), Query Frame = 1
Query:   67 EAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIKSH 432
            E MD+ TAL++ + KS A+GG+ RGLHE AK+IEK  AQLCVLAEDCNQPDYVKLVKALCADH++ LLTVPSA TLGEWAGLCKIDS GNA KV GCSC+V+ DFGEE+  LN+V +H+ S+
Sbjct:   23 EDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.358e-46
Identity = 90/121 (74.38%), Postives = 102/121 (84.30%), Query Frame = 1
Query:   67 EAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIKS 429
            E MDLMTAL++ L K+ A+GG+ RGLHE AK+IEK  AQL VLAEDCNQPDYVKLVKALCADH V LLTVPSA TLGEWAGLCKIDS GNA KV GCSC+VV DFGEE+  L++V++HI S
Sbjct:   23 EDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.257e-33
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 1
Query:   64 GEAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIK 426
            G  MD+ TALQ VL  +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V     LGEW GLCKID  G   KV GCSCVVV D+G+ES   +V+ ++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.257e-33
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 1
Query:   64 GEAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIK 426
            G  MD+ TALQ VL  +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V     LGEW GLCKID  G   KV GCSCVVV D+G+ES   +V+ ++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.257e-33
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 1
Query:   64 GEAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIK 426
            G  MD+ TALQ VL  +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V     LGEW GLCKID  G   KV GCSCVVV D+G+ES   +V+ ++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.257e-33
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 1
Query:   64 GEAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIK 426
            G  MD+ TALQ VL  +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V     LGEW GLCKID  G   KV GCSCVVV D+G+ES   +V+ ++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_CYAPA (40S ribosomal protein S12 OS=Cyanophora paradoxa GN=RPS12 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.113e-32
Identity = 64/118 (54.24%), Postives = 86/118 (72.88%), Query Frame = 1
Query:   73 MDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIK 426
            MD+MTAL+ VL K++   GL RGLHE AK +++ +AQLCVLA + N+P Y +LV+ALCA+H ++L+ VP    LGEW GLCKID  G A KV GCSC V+  FGEES+   V+ +++K
Sbjct:   17 MDVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEHGINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLK 134          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_XENLA (40S ribosomal protein S12 OS=Xenopus laevis GN=rps12 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.148e-32
Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   64 GEAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIK 426
            G  MD+ TALQ VL  +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+  ++L+ V     LGEW GLCKID  G   KV GCSCVVV D+G+ES   +V+ ++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEPQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of EY756882 vs. ExPASy Swiss-Prot
Match: RS12_RAT (40S ribosomal protein S12 OS=Rattus norvegicus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.148e-32
Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   64 GEAMDLMTALQVVLTKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSANTLGEWAGLCKIDSYGNATKVEGCSCVVVNDFGEESDGLNVVHQHIK 426
            G  MD+ TALQ VL  +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+AL A+H ++L+ V     LGEW GLCKID  G   KV GCSCVVV D+G+ES   +V+ ++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
The following BLAST results are available for this feature:
BLAST of EY756882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS12_HORVU2.935e-5076.4240S ribosomal protein S12 OS=Hordeum vulgare GN=RP... [more]
RS122_ARATH1.154e-4671.3140S ribosomal protein S12-2 OS=Arabidopsis thalian... [more]
RS121_ARATH3.358e-4674.3840S ribosomal protein S12-1 OS=Arabidopsis thalian... [more]
RS12_PIG4.257e-3354.5540S ribosomal protein S12 OS=Sus scrofa GN=RPS12 P... [more]
RS12_HUMAN4.257e-3354.5540S ribosomal protein S12 OS=Homo sapiens GN=RPS12... [more]
RS12_CHICK4.257e-3354.5540S ribosomal protein S12 OS=Gallus gallus GN=RPS1... [more]
RS12_BOVIN4.257e-3354.5540S ribosomal protein S12 OS=Bos taurus GN=RPS12 P... [more]
RS12_CYAPA2.113e-3254.2440S ribosomal protein S12 OS=Cyanophora paradoxa G... [more]
RS12_XENLA6.148e-3253.7240S ribosomal protein S12 OS=Xenopus laevis GN=rps... [more]
RS12_RAT6.148e-3253.7240S ribosomal protein S12 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-G04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756882 ID=EY756882; Name=EY756882; organism=Citrus sinensis; type=EST; length=674bp
CCACGCGTCCGGACATGTGATGACGCTGCCCCTGCTGTTGAGACAGCACC
TCCTGCCCCCCTTGGTGAGGCAATGGATCTGATGACGGCTTTGCAGGTTG
TGTTGACAAAATCACTTGCTCATGGTGGACTTGCTCGTGGCCTTCATGAA
GGTGCCAAAGTGATTGAAAAGCATGCTGCCCAGCTCTGTGTATTGGCTGA
GGATTGTAACCAACCTGACTATGTGAAATTGGTCAAGGCACTCTGTGCTG
ACCATAACGTAAGCTTGTTGACGGTTCCCAGTGCCAATACCCTCGGCGAG
TGGGCTGGTTTGTGCAAGATTGACTCATATGGAAACGCCACGAAGGTTGA
GGGTTGTTCCTGTGTTGTTGTGAACGATTTCGGAGAGGAAAGCGATGGTC
TTAACGTTGTTCATCAGCACATCAAATCTCACTGAGTATCAGAGATGGAT
TCATAGGTCAACTATTATATTTATAGAGAGGGCCTTGACTTTTTTCTGCC
AAATTGTGTGTGGTTGTCTCACTCCAAGGAGATTTTGTGATCGTTAAGTG
CTATGACTTACAGTACTCTTGATCCACAATCCTTTATTGCAACTGAAAAC
ATCAATCCTTTTCTATATATTTGCTGGATTGAATCTTTTCAAAGCGAAAG
TCAGGATATTTAGAAAAATATACG
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