EY756878

Overview
NameEY756878
Unique NameEY756878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756878_ssr713 microsatellite EY756878_ssr713:713..727. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10693 contig Csv1_Contig10693:1003..1852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN7_ARATH (Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana GN=MAN7 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.403e-48
Identity = 92/144 (63.89%), Postives = 110/144 (76.39%), Query Frame = 1
Query:    4 RVRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKLYQIRKIFARMRNVE 435
            R+ GID  TVHSYPD+W   S+++ Q+ FLN WLD HIQDA+++L KPI+LAEFGKS K PGY+  QRD++FNTVY KIY SAKR       LFWQLL  G+D F+DGY I+LSQS ST NVI+QQ+ KL  IRKIFARM NVE
Sbjct:  268 RIPGIDFVTVHSYPDEWFPDSSEQSQMDFLNKWLDAHIQDAQNVLHKPIILAEFGKSMKKPGYTPAQRDIVFNTVYSKIYGSAKRGGAAAGGLFWQLLVNGIDNFQDGYGIILSQSSSTVNVISQQSRKLTLIRKIFARMINVE 411          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN1_ORYSJ (Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa subsp. japonica GN=MAN1 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.669e-44
Identity = 83/144 (57.64%), Postives = 104/144 (72.22%), Query Frame = 1
Query:    4 RVRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKLYQIRKIFARMRNVE 435
            +V GID ATVHSYPDQWLS  +D+ QL F+  WLD HI DA+ +LRKP+L+AEFGKS KDPGYS+ QRD ++ TVY KIY SA+R       LFWQLL  GMD++RDGYE+V  ++PST  VIT  + +L  + K FAR R  +
Sbjct:  277 QVPGIDFATVHSYPDQWLSGKDDQAQLGFMGRWLDAHIADAQAVLRKPLLIAEFGKSWKDPGYSSGQRDALYGTVYAKIYESARRGGATVGGLFWQLLVPGMDSYRDGYEVVFGETPSTTGVITTNSRRLRFLSKAFARARQAQ 420          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN5_SOLLC (Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.139e-32
Identity = 62/129 (48.06%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    7 VRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKL 393
            ++ ID AT+H+Y DQWLS  +D  Q+ F+  W+ +H QDA++IL+KP++LAEFGKS +DPGY+   RD   +T+Y  IYS AK        L WQL+ +GM+ + DGY I L ++PSTA +IT Q+H +
Sbjct:  277 IKEIDFATIHAYTDQWLSGQSDDAQMIFMQKWMTSHWQDAKNILKKPLVLAEFGKSSRDPGYNQNIRDTFMSTIYRNIYSLAKDGGTMGGSLIWQLVAQGMENYEDGYCIELGKNPSTAGIITSQSHAM 405          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN2_SOLLC (Mannan endo-1,4-beta-mannosidase 2 OS=Solanum lycopersicum GN=MAN2 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.139e-32
Identity = 62/129 (48.06%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    7 VRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKL 393
            ++ ID AT+H+Y DQWLS  +D  Q+ F+  W+ +H QDA++IL+KP++LAEFGKS +DPGY+   RD   +T+Y  IYS AK        L WQL+ +GM+ + DGY I L ++PSTA +IT Q+H +
Sbjct:  277 IKEIDFATIHAYTDQWLSGQSDDAQMIFMQKWMTSHWQDAKNILKKPLVLAEFGKSSRDPGYNQNIRDTFMSTIYRNIYSLAKDGGTMGGSLIWQLVAQGMENYEDGYCIELGKNPSTAGIITSQSHAM 405          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN3_ARATH (Mannan endo-1,4-beta-mannosidase 3 OS=Arabidopsis thaliana GN=MAN3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.011e-30
Identity = 56/134 (41.79%), Postives = 92/134 (68.66%), Query Frame = 1
Query:    4 RVRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKLYQIR 405
            ++  ID A++HSYPD W  + +++ +L+ L  WL+ H++DA++IL+KP++L EFGK    PGY+  QRD +FN  +  IY SA++       LFW ++++GM+ F+D   IVLS++ +T N+IT+++ KL  IR
Sbjct:  271 KLDAIDFASIHSYPDLWFPNLDEKSRLNLLRKWLECHLEDAQNILKKPLILGEFGKPTNTPGYTQAQRDAVFNATFDTIYESAEKGGPAAGALFWHVISDGMNNFKDPLSIVLSENSTTVNIITEESRKLGLIR 404          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN9_ORYSJ (Putative mannan endo-1,4-beta-mannosidase 9 OS=Oryza sativa subsp. japonica GN=MAN9 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 8.548e-30
Identity = 56/129 (43.41%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    7 VRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKL 393
            V  +D AT+HSYPDQW+S ++  +Q++F+  W+  HI+D+  +LRKP+L+ EFG S +  GY+   RD  F TVY  +Y+SA+        LFWQ++  GM+++ DGYE+VL +S STA+V+  Q  ++
Sbjct:  273 VPAVDFATIHSYPDQWVSGASSDEQVAFMRKWMADHIRDSAAVLRKPLLVTEFGWSARSNGYTVAARDAYFRTVYDAVYASAREGGACAGGLFWQVMAPGMESWTDGYEVVLERSKSTADVVAHQCARI 401          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN4_SOLLC (Mannan endo-1,4-beta-mannosidase 4 OS=Solanum lycopersicum GN=MAN4 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 8.001e-28
Identity = 58/133 (43.61%), Postives = 87/133 (65.41%), Query Frame = 1
Query:    4 RVRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKLYQI 402
            +V+GID  T+H YP+QWL       Q  + + W+  HI D++ +L+KP+L+AEFGKS K PGY+  +RD  F  +Y  I++ AK        LFWQ+L +GM +F DGY++VL +SPST+ VI  Q+ +L ++
Sbjct:  267 QVQGIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDSK-MLKKPLLIAEFGKSTKTPGYTVAKRDNYFEKIYGTIFNCAKSGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPSTSRVILLQSLRLSKL 398          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN1_SOLLC (Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lycopersicum GN=MAN1 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.773e-27
Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    7 VRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAH 387
            +  ID AT+H+Y DQW+S  +D  QL ++  W+ +H +DA +IL+KP++LAEFGKS +  G     RD+  ++VY  +Y+ AK        L WQL+  GM+ + DGY IVL Q+PST  +I+ QAH
Sbjct:  265 INEIDFATIHAYTDQWVSGQSDDAQLVWMEKWITSHWEDARNILKKPLVLAEFGKSSRGQG----SRDIFMSSVYRNVYNLAKEGGTMAGSLVWQLMAHGMENYDDGYCIVLGQTPSTTQIISDQAH 387          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN3_SOLLC (Mannan endo-1,4-beta-mannosidase 3 OS=Solanum lycopersicum GN=MAN3 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.155e-26
Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    7 VRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAH 387
            +  ID AT+H+Y DQWLS  +D  QL+++  W+ +H +DA +IL+KP++LAEFGKS +    S   RD+  ++VY  +Y+ AK        L WQL+  GM+ + DGY IVL  +PST  +I+ QAH
Sbjct:  266 INEIDFATIHAYTDQWLSGQSDEAQLAWMEKWIRSHWEDARNILKKPLVLAEFGKSSRSGEGS---RDIFMSSVYRNVYNLAKEGGTMGGSLVWQLMAHGMENYDDGYSIVLGLNPSTTQIISNQAH 389          
BLAST of EY756878 vs. ExPASy Swiss-Prot
Match: MAN2_ORYSJ (Mannan endo-1,4-beta-mannosidase 2 OS=Oryza sativa subsp. japonica GN=MAN2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.409e-24
Identity = 50/134 (37.31%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    4 RVRGIDSATVHSYPDQWLSSSNDRDQLSFLNNWLDTHIQDAEHILRKPILLAEFGKSRKDPGYSTYQRDVMFNTVYYKIYSSAKRXXXXXXXLFWQLLTEGMDAFRDGYEIVLSQSPSTANVITQQAHKLYQIR 405
            +++ ID A+VH YPD WL  ++  ++L F+  W+  H++D +  L KP+L+ EFG S +  G+    RDV++  VY  ++ SA+R       L WQL  EGM+ + DG+ IV S+ PS   +I +Q+ +L  +R
Sbjct:  297 KIQDIDFASVHVYPDNWLQHASLDEKLKFMTRWITAHVEDGDGELEKPVLVTEFGLSHQVEGFEDAHRDVLYRAVYDIVHGSARRGGAAGGALVWQLAAEGMEEYHDGFSIVPSERPSMMRLIKEQSCRLAAVR 430          
The following BLAST results are available for this feature:
BLAST of EY756878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MAN7_ARATH1.403e-4863.89Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis ... [more]
MAN1_ORYSJ4.669e-4457.64Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa... [more]
MAN5_SOLLC3.139e-3248.06Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lyco... [more]
MAN2_SOLLC3.139e-3248.06Mannan endo-1,4-beta-mannosidase 2 OS=Solanum lyco... [more]
MAN3_ARATH5.011e-3041.79Mannan endo-1,4-beta-mannosidase 3 OS=Arabidopsis ... [more]
MAN9_ORYSJ8.548e-3043.41Putative mannan endo-1,4-beta-mannosidase 9 OS=Ory... [more]
MAN4_SOLLC8.001e-2843.61Mannan endo-1,4-beta-mannosidase 4 OS=Solanum lyco... [more]
MAN1_SOLLC6.773e-2744.09Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lyco... [more]
MAN3_SOLLC1.155e-2644.09Mannan endo-1,4-beta-mannosidase 3 OS=Solanum lyco... [more]
MAN2_ORYSJ2.409e-2437.31Mannan endo-1,4-beta-mannosidase 2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-F12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756878 ID=EY756878; Name=EY756878; organism=Citrus sinensis; type=EST; length=851bp
CCACGCGTCCGGGGCATTGATTCTGCAACAGTTCATTCCTACCCTGATCA
ATGGTTATCAAGCTCAAATGATCGAGATCAACTTTCTTTCTTGAACAACT
GGCTCGACACACACATCCAAGATGCTGAGCACATTCTTCGGAAGCCAATA
CTCCTAGCAGAATTCGGGAAATCGCGGAAAGATCCTGGTTATAGCACCTA
CCAGAGAGATGTAATGTTTAATACCGTGTACTACAAGATTTATTCTTCGG
CTAAAAGAGGAGGTGCAGCAGCTGGAGGCCTGTTTTGGCAACTTCTGACT
GAAGGAATGGACGCTTTTCGAGATGGTTATGAGATAGTTTTGAGCCAAAG
CCCCTCGACTGCAAATGTTATTACTCAACAGGCTCACAAGTTGTACCAAA
TTCGTAAGATTTTCGCAAGAATGAGAAATGTTGAGAGGCGGAAGAGGTCC
AGGGGCATGAGGAGACGTCAGAGGCAGGGTGGAAACAGGGGAAGGCGCAT
AGGAAAACTGAAATATGTATTTGCTTGAACGAAATGAGACCCGGGTTGTA
TCAGCGCGTGGTGCTATNCACTTAAACGGATAGTCAGTCAGGGTTAGGGA
TAGCAACTGGATCGCTCCATAATAGATTCCCATATATTCATTTAATTAGA
TCCGAATAATATCATCCTAAAAATTTTTAGATTTGGAAATGGATATTTTA
AAATTTATTCCGATGGAATGGAATGGATATGAAAATTATTTTTACTTATG
GGAATTCCGTTTACCCAAAAAAAAAAAAAATAAANNNNNNNNNNNNTNTN
ATNTATTTTAAGGGGGGGCCGCTCTAAGGACCAAGTTTAATAGCGGGGGT
G
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