EY756870

Overview
NameEY756870
Unique NameEY756870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756870 vs. ExPASy Swiss-Prot
Match: KDSB_PARUW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=kdsB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.383e-13
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 3
Query:    6 RPLGI*SYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN 218
            R LG+  Y  +F+  Y  L  TPLQLEEDLEQLKVLE+GY++KV  VD    GVD PED+ K+E ++ ++N
Sbjct:  186 RHLGLYVYRPSFIINYQKLPSTPLQLEEDLEQLKVLEHGYRIKVAIVDQANIGVDTPEDIHKVEEWLCKQN 256          
BLAST of EY756870 vs. ExPASy Swiss-Prot
Match: KDSB_GEOSM (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp. (strain M21) GN=kdsB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 30/68 (44.12%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   12 LGI*SYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRER 215
            +G+  Y   FL ++ GL PT L+L E LEQL+VLENGY++K+++ + E+ GVD P D++K+   +++R
Sbjct:  185 VGLYVYRREFLPVFAGLKPTYLELAEKLEQLRVLENGYRIKIVETEFESIGVDTPADLDKVLERLKDR 252          
BLAST of EY756870 vs. ExPASy Swiss-Prot
Match: KDSB_GEOBB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=kdsB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.997e-11
Identity = 29/61 (47.54%), Postives = 45/61 (73.77%), Query Frame = 3
Query:   12 LGI*SYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 194
            +G+  Y   FL ++ GL PT L+L E LEQL+VLENGY++K+++ + E+ GVD P D++K+
Sbjct:  185 VGLYVYRREFLPVFAGLQPTYLELAEKLEQLRVLENGYRIKIVETEFESIGVDTPADLDKV 245          
The following BLAST results are available for this feature:
BLAST of EY756870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
KDSB_PARUW4.383e-1353.523-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOSM2.405e-1144.123-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOBB6.997e-1147.543-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-F03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756870 ID=EY756870; Name=EY756870; organism=Citrus sinensis; type=EST; length=637bp
CCACGCGTCCGCTTGGAATTTAGAGCTATGACTCAAACTTCCTGAAGATA
TATCCAGGCCTTCATCCTACTCCCCTACAACTAGAAGAGGATCTAGAACA
GCTGAAAGTCCTTGAGAATGGCTATAAGATGAAGGTTATAAAGGTAGACC
ATGAAGCTCACGGTGTTGATGCTCCAGAAGACGTTGAGAAGATAGAATCA
TTTATGCGTGAGAGAAACTTGTCCTAGTTTTTAGTGACATAATCTGATTA
AAAGGAAAGGATGCGAATTTGCCTGTACCAGCAGTCAGCTTGCTCCATGT
TAATTATAGTTTGATTGGAGGTGTGTTCTTTCTCTCTGTGACAGTCTCTT
CCCCGGGAAAATAATTCTATTTATATTTGCCTGCCACGGTTTTTCCCATT
GTTGGAGTTACCGGAGTTTTTGTGGGTGTACTTGTACCAGTAGCTGTGAG
TAACAGCAATTTTGAGTTAGACGTTGATTCATTGTAATAATACTTTTTTT
TGTTTTTTTGGGGACCTCGTCTGGTGTTGAGTTTGTGAATATGTACCATA
TTACATATTTTAAAGTACTTCTTGCTGTAATGAATGGAATAAAAAGCGTC
ATATTTAAGGTCAAAACAAATAAAAAAAAAAAAAAAG
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