EY756778

Overview
NameEY756778
Unique NameEY756778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756778_ssr458 microsatellite EY756778_ssr458:458..469. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13355 contig Csv1_Contig13355:1..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756778 vs. ExPASy Swiss-Prot
Match: CC124_HUMAN (Coiled-coil domain-containing protein 124 OS=Homo sapiens GN=CCDC124 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.341e-14
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  453 TAEE-EEYERMVLVTNTNR---DESIIEARSVEEALDKMKVADNLPVDRHPERRLKASFKAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKESPD 725
            TAE+ + +  + L  N NR   +E  +EAR++E+A+  + VA+    DRHPERR++A+F AFEEA+LPRLK+E P +  +Q K ++ K W  SPD
Sbjct:  116 TAEKAKSHLEVPLEENVNRRVLEEGSVEARTIEDAIAVLSVAEEA-ADRHPERRMRAAFTAFEEAQLPRLKQENPNMRLSQLKQLLKKEWLRSPD 209          
BLAST of EY756778 vs. ExPASy Swiss-Prot
Match: CC124_BOVIN (Coiled-coil domain-containing protein 124 OS=Bos taurus GN=CCDC124 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.341e-14
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  444 HSRTAEEEEYERMVLVTNTNRDESIIEARSVEEALDKMKVADNLPVDRHPERRLKASFKAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKESPD 725
            H     EE   R VL      +E  +EAR++E+A+  + V +   VDRHPERR++A++ AFEEA+LPRLK+E P +  +Q K M+ K W  SPD
Sbjct:  123 HLEVPLEENVNRRVL------EEGSVEARTIEDAIAVLSVTEEA-VDRHPERRMRAAYTAFEEAQLPRLKQENPNMRLSQLKQMLKKEWLRSPD 209          
BLAST of EY756778 vs. ExPASy Swiss-Prot
Match: CC124_PONAB (Coiled-coil domain-containing protein 124 OS=Pongo abelii GN=CCDC124 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.901e-14
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  453 TAEE-EEYERMVLVTNTNR---DESIIEARSVEEALDKMKVADNLPVDRHPERRLKASFKAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKESPD 725
            TAE+ + +  + L  N NR   +E  +EAR++E+A+  + VA+    DRHPERR +A+F AFEEA+LPRLK+E P +  +Q K ++ K W  SPD
Sbjct:  116 TAEKAKSHLEVPLEENVNRRVLEEGSVEARTIEDAIAVLSVAEEA-ADRHPERRQRAAFTAFEEAQLPRLKQENPNMRLSQLKQLLKKEWLRSPD 209          
BLAST of EY756778 vs. ExPASy Swiss-Prot
Match: CC124_MOUSE (Coiled-coil domain-containing protein 124 OS=Mus musculus GN=Ccdc124 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 3
Query:  486 LVTNTNR---DESIIEARSVEEALDKMKVADNLPVDRHPERRLKASFKAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKESPD 725
            L  N NR   +E  +EAR+VE+A+  + VA+    DRHPERR++A+F AFEE +LPRLK+E P +  +Q K ++ K W  SPD
Sbjct:  123 LEENLNRRLQEEGSVEARTVEDAIAVLSVAEE--ADRHPERRMRAAFTAFEEVQLPRLKQENPNMRLSQLKQLLKKEWLRSPD 203          
BLAST of EY756778 vs. ExPASy Swiss-Prot
Match: C124A_XENLA (Coiled-coil domain-containing protein 124-A OS=Xenopus laevis GN=ccdc124-A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  444 HSRTAEEEE-YERMVLVTNTNR---DESIIEARSVEEALDKMKVADNLPVDRHPERRLKASFKAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKESPD 725
            H  T E+ + +  M L  N NR   +E  +EAR+VE+A+  + V   L  DRHPERR+KA+F AFEE  +P LK+E P +  +Q K ++ K W +SP+
Sbjct:  109 HKATTEKPKTHLEMPLEENVNRRVLEEGEVEARTVEDAIAALSVGKEL--DRHPERRMKAAFAAFEEINMPLLKQENPNMRLSQLKHLLKKEWMKSPE 204          
BLAST of EY756778 vs. ExPASy Swiss-Prot
Match: CC124_XENTR (Coiled-coil domain-containing protein 124 OS=Xenopus tropicalis GN=ccdc124 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.609e-13
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 3
Query:  444 HSRTAEEEEYERMVLVTNTNRDESIIEARSVEEALDKMKVADNLPVDRHPERRLKASFKAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKESPD 725
            H     EE   R +L      +E  +EAR+VE+A+  + ++  L  DRHPERR+KA+F AFEE  +PR+K+E P +  +Q K ++ K W +SP+
Sbjct:  119 HLEIPLEENLNRRIL------EEGEVEARTVEDAIAALSMSKEL--DRHPERRMKAAFTAFEEINMPRIKQENPNMRLSQLKQLLKKEWMKSPE 204          
BLAST of EY756778 vs. ExPASy Swiss-Prot
Match: CC124_DANRE (Coiled-coil domain-containing protein 124 OS=Danio rerio GN=ccdc124 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  459 EEEEYERMVLVTNTNR---DESIIEARSVEEALDKMKVADNLPVDRHPERRLKASFKAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKESPD 725
            +E+ +  + L  N NR   +E  +EAR++E+A+  +   ++L  DRHPERR+KA++ AFEEA +PR+K E P +  +Q K  + K W +SP+
Sbjct:  114 KEKSHLDVPLEENVNRIVPEEGTVEARTIEDAIAVLSTKEDL--DRHPERRMKAAYTAFEEANMPRVKMENPNMRLSQLKQQLKKEWTKSPE 203          
BLAST of EY756778 vs. ExPASy Swiss-Prot
Match: C124B_XENLA (Coiled-coil domain-containing protein 124-B OS=Xenopus laevis GN=ccdc124-B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 3
Query:  444 HSRTAEEEEYERMVLVTNTNRDESIIEARSVEEALDKMKVADNLPVDRHPERRLKASFKAFEEAELPRLKEEKPGLTHNQYKDMIWKLWKESPD 725
            H     EE   R VL      +E  +EAR+VE+A+  + +   L  DRHPERR+KA+F AFEE  +P LK+E P +  +Q K ++ K W +SP+
Sbjct:  119 HLEIPLEENVNRRVL------EEGEVEARTVEDAIAALSIGKEL--DRHPERRMKAAFTAFEEINMPLLKQENPNMRLSQLKQLLKKEWMKSPE 204          
The following BLAST results are available for this feature:
BLAST of EY756778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CC124_HUMAN1.341e-1445.26Coiled-coil domain-containing protein 124 OS=Homo ... [more]
CC124_BOVIN1.341e-1444.68Coiled-coil domain-containing protein 124 OS=Bos t... [more]
CC124_PONAB3.901e-1445.26Coiled-coil domain-containing protein 124 OS=Pongo... [more]
CC124_MOUSE6.654e-1448.19Coiled-coil domain-containing protein 124 OS=Mus m... [more]
C124A_XENLA3.302e-1342.86Coiled-coil domain-containing protein 124-A OS=Xen... [more]
CC124_XENTR9.609e-1340.43Coiled-coil domain-containing protein 124 OS=Xenop... [more]
CC124_DANRE1.255e-1240.22Coiled-coil domain-containing protein 124 OS=Danio... [more]
C124B_XENLA2.141e-1241.49Coiled-coil domain-containing protein 124-B OS=Xen... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-E10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756778 ID=EY756778; Name=EY756778; organism=Citrus sinensis; type=EST; length=858bp
CCACGCGTCCGGCAAACACTTTCTGATTATTGAAATCTCGATCGATCAAT
AATTGATCGAAGATGCCGAAGAAGATGGGAGTGAACAGCAAAGCCGAGGA
GGCGCGTGCTCGCAAGAGCGCAACGGAATCGGAACGAAAGGAGCGCGAGG
CGAGGGAGAAGGAGGAACAGTACTGGCGCGAAGCCGAGGGAGCAAAGTCA
CGCGCCGCGAAGAAACGCGAGGAGGAAGCCGAGAAGCGAGCCGAAGCCGC
CGCGAAGAAAGCGGAGGCGCGGCGCCTGGCGGAGTTGGAGGAGAAAGAGC
TCGAAAAGGCTATGAAAAAGCCGGACAAGAAAGCGAACAGGGTTTCGATT
CCGGTACCGAAGGTGACGGAGGCTGATCTGCGGAAGAGGCGCGAGCAGGA
GCAGGCGGAGTTGGGGAAGAAGGCGGAGGAGGCGAAAAAGAAGCACAGCA
GGACGGCGGAGGAGGAGGAGTATGAGCGGATGGTTTTGGTGACGAATACG
AATCGTGATGAGTCGATTATCGAGGCCAGGAGCGTTGAGGAGGCTTTAGA
TAAGATGAAGGTGGCGGATAACTTGCCGGTCGATAGGCATCCAGAACGAC
GGCTGAAAGCGTCCTTTAAGGCTTTTGAAGAAGCTGAGCTCCCCAGGCTG
AAGGAAGAGAAACCAGGTCTTACTCACAATCAATACAAGGACATGATATG
GAAGCTTTGGAAAGAATCTCCAGACATCCTCTCAATCAGATTACGGAGTG
AGCATCCTACATTGCATTGTTGGGATCTTCAAGGGGNTGTATCAAGCGAG
TTCTCTGTGGGGCACATTGGTGAGGAATGGTCATTTCTTCTGCAGGGGAT
CATTTTGT
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