EY756760

Overview
NameEY756760
Unique NameEY756760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_ARATH (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.488e-35
Identity = 72/85 (84.71%), Postives = 77/85 (90.59%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVPA 266
            AYAAGRAGGTMTGVLSAANEKAVEMFIDEKI YLDIFKVVELTCDKH+ +LVTSPSLE+I+HYD WAREYAA +Q SSG  PV A
Sbjct:  393 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCDKHRNELVTSPSLEEIVHYDLWAREYAANVQLSSGARPVHA 477          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_ORYSJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.539e-35
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVP 263
            AYAAGRAGGTMTGVLSAANEKAVE+FIDEKIGYLDIFKVVELTCD H+ +LVT PSLE+IIHYD WAREYAA LQ S+G SPVP
Sbjct:  389 AYAAGRAGGTMTGVLSAANEKAVELFIDEKIGYLDIFKVVELTCDAHRNELVTRPSLEEIIHYDLWAREYAASLQPSTGLSPVP 472          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_MENPI (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.293e-33
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSP 257
            AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKH++++  SPSLE+I+HYD WAR+YAA +  S+G SP
Sbjct:  386 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHRSEMAVSPSLEEIVHYDQWARDYAATVLKSAGLSP 467          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_SYNPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain WH8102) GN=dxr PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.350e-19
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVPA*LLA 278
            AYAAGRAGGTM  V++AANE+AV  F++EKI +LDI  V+E  C++HKADL+  P LED++  D WAR  A   Q   G + VP   LA
Sbjct:  321 AYAAGRAGGTMPAVMNAANEEAVAQFLEEKIHFLDIPVVIEAACERHKADLIAHPQLEDVLAVDQWAR-MAVREQVKRGTTRVPLAALA 408          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_PROMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxr PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.350e-19
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFSSG--RSPVPA 266
            AYAAGRAGGTM  VL+AANE+AV  F++E+I +LDI +V+E  C++HK DL T P L+D++  DAWAR+ A   Q   G  R P+PA
Sbjct:  324 AYAAGRAGGTMPAVLNAANEEAVAQFLEERIHFLDIPEVIEAACERHKPDLQTQPQLDDVLAVDAWARK-AVQEQVKRGTRRLPLPA 409          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_SYNS9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9902) GN=dxr PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.820e-18
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVP 263
            AYAAGRAGGTM  V++AANE+AV  F++E+I +LDI +V+E  C++HK DL+  P L+D++  D WAR  A   Q S G + +P
Sbjct:  329 AYAAGRAGGTMPAVMNAANEEAVAQFLEERIHFLDIPEVIEAACERHKPDLMAHPQLDDVLEVDQWART-AVREQVSRGTTRIP 411          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_PROMT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL2A) GN=dxr PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.683e-18
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWARE 218
            AY+AG++GGTM  VL+AANEKAVE+F++E+  ++DI KV+E  C+KHK DL  +PSL +I+  D WARE
Sbjct:  329 AYSAGKSGGTMPAVLNAANEKAVELFLEERFKFIDIPKVIEAICEKHKCDLNLNPSLSEILEIDNWARE 397          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_PROM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL1A) GN=dxr PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.683e-18
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWARE 218
            AY+AG++GGTM  VL+AANEKAVE+F++E+  ++DI KV+E  C+KHK DL  +PSL +I+  D WARE
Sbjct:  329 AYSAGKSGGTMPAVLNAANEKAVELFLEERFKFIDIPKVIEAICEKHKCDLNLNPSLSEILEIDNWARE 397          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_SYNS3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9311) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.072e-17
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWARE 218
            AYAAGRAGGTM  VL+AANE+AV  F++EKI +LDI K++E  C++HK DL  +P L+D++  D WAR+
Sbjct:  329 AYAAGRAGGTMPAVLNAANEEAVAQFLEEKIHFLDIPKMIEGACEQHKPDLAANPCLDDVLAVDQWARQ 397          
BLAST of EY756760 vs. ExPASy Swiss-Prot
Match: DXR_ANAVT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxr PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 3
Query:   12 AYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWARE 218
            AYAAGRAGG+M  VL+AANE+ V +F+DEKI +LDI + +EL CD+H+ D   +PSL+DI+  D WAR+
Sbjct:  311 AYAAGRAGGSMPAVLNAANEQVVALFLDEKIKFLDIPRCIELVCDRHQNDNCANPSLDDILAADQWARQ 379          
The following BLAST results are available for this feature:
BLAST of EY756760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DXR_ARATH1.488e-3584.711-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_ORYSJ2.539e-3585.711-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MENPI5.293e-3380.491-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_SYNPX4.350e-1953.931-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMM4.350e-1955.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS92.820e-1851.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMT3.683e-1857.971-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM13.683e-1857.971-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS31.072e-1757.971-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAVT1.828e-1757.971-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-D03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756760 ID=EY756760; Name=EY756760; organism=Citrus sinensis; type=EST; length=419bp
CCACGCGTCCGGCCTATGCTGCTGGACGGGCTGGAGGCACCATGACAGGA
GTTCTTAGTGCAGCTAACGAGAAAGCAGTAGAGATGTTCATTGATGAAAA
GATTGGCTATCTGGATATTTTCAAGGTTGTGGAGCTAACGTGTGATAAGC
ACAAGGCGGACTTGGTAACCTCGCCTTCCCTAGAGGATATAATACATTAT
GATGCATGGGCACGAGAGTATGCAGCTGGTTTGCAATTTTCATCTGGTAG
AAGCCCTGTTCCAGCATGACTGCTTGCATTGATGCCCTACTTTGAGAACT
AGAGAGATGTGTTTACTTTTTGCCAAAAACTGGTATTCTCGTCAATGTTT
AAAGAGGCATCGAGCAATTGTACCATAAATAAATATAAGGTGGGGATTCA
GTATGTGTCCCCGATTTTN
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