EY756746

Overview
NameEY756746
Unique NameEY756746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756746_ssr352 microsatellite EY756746_ssr352:352..363. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1817 contig Csv1_Contig1817:40..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756746 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.153e-33
Identity = 59/88 (67.05%), Postives = 71/88 (80.68%), Query Frame = 1
Query:   28 MTLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 291
            M L   T+++ +L+++ SL++   AGS FCDSKC  RC +AG+ DRCLKYCGICCE+CKCVPSGTYGNKHECPCYRDK N KGK KCP
Sbjct:    1 MKLFLLTLLLVTLVITPSLIQTTMAGSSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of EY756746 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.198e-14
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 1
Query:  115 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 291
            C  KC  RC +   +  C+ +C  CC  C CVP+GTYGNK  CPCY +   K+G PKCP
Sbjct:   54 CQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of EY756746 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.951e-13
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = 1
Query:  115 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 291
            C  +C  RC     +  C+ +C  CC  C CVP G YGNK  CPCY +   ++GKPKCP
Sbjct:   38 CKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of EY756746 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.587e-13
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = 1
Query:  115 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 291
            C S+C  RCK+      C+ +C  CC  C CVP G YGNK  C CY +   ++G PKCP
Sbjct:   48 CPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of EY756746 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.566e-12
Identity = 33/97 (34.02%), Postives = 46/97 (47.42%), Query Frame = 1
Query:   25 KMTLHFTTVVVCSLILSFSLLEPATAGSPF--------CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 291
            + TL    ++VC  + ++ L   A  G+          C  +C +RC ++     CL+ C  CC  C CVP GT GN H CPCY       G+ KCP
Sbjct:    5 RSTLVLLLIIVC--LTTYELHVHAADGAKVGEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of EY756746 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.494e-12
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 1
Query:  115 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 291
            C  +C  RC ++   + CL+ C  CC  C CVP GT GN H CPCY     + G+ KCP
Sbjct:   41 CGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
The following BLAST results are available for this feature:
BLAST of EY756746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SNAK1_SOLTU1.153e-3367.05Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GAST1_SOLLC1.198e-1449.15Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC2.951e-1345.76Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH8.587e-1345.76Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
GASA2_ARATH5.566e-1234.02Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH9.494e-1244.07Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-B12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756746 ID=EY756746; Name=EY756746; organism=Citrus sinensis; type=EST; length=473bp
TTCGTCGACCCCGCGTCCGGCAGAAAAATGACGCTTCACTTTACAACTGT
TGTTGTTTGCTCTCTTATCCTCAGCTTCTCTCTCTTGGAGCCTGCCACGG
CTGGATCACCCTTTTGTGACAGCAAGTGTGCGGAAAGGTGCAAGCAAGCA
GGAGTGCAGGACCGGTGCTTGAAGTACTGCGGGATATGCTGTGAGGACTG
CAAGTGTGTGCCTTCTGGGACTTACGGAAACAAGCATGAGTGCCCTTGCT
ACAGGGACAAGGTTAACAAGAAGGGGAAGCCCAAGTGCCCTTGAATTTCG
AAACCGCATCAAAATTCAAATGCATCTGCTTTAATTATGTTCTGTAAACA
GTATTATTATTATTGGTAGTATTATATTATGATGGTGGTGGAATGTTAAT
GCACTTATATTATTCTTAAATAATAAAAGCTATTTCTCTTGGTGTGAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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