EY756731

Overview
NameEY756731
Unique NameEY756731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10724 contig Csv1_Contig10724:770..1428. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756731 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.866e-49
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:    7 VRMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 315
            V MNEMAEI+LSFED++LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+MKLKDGLR TYFWIKEQIEKEKTQG+D++ YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  276 VSMNEMAEIILSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE 378
[Close]
BLAST of EY756731 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.866e-49
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:    7 VRMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 315
            V MNEMAEI+LSFED++LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+MKLKDGLR TYFWIKEQIEKEKTQG+D++ YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  276 VSMNEMAEIILSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE 378
[Close]
BLAST of EY756731 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.998e-48
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:    7 VRMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 315
            V MNEMAEIVLSFE+K+LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+M+LKDGLRITYFWIKEQ+EKEK +G+DLS YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  269 VSMNEMAEIVLSFENKQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEKAEGVDLSAYGSSKVVQTQAPVQLGSLRAADGKE 371
[Close]
BLAST of EY756731 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.592e-48
Identity = 91/103 (88.35%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:    7 VRMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 315
            V MNEMAE+VLSFE+KKLPIHHIPGPEGVRGRNSDN LIKEKLGWAP+M+LK+GLRITYFWIKEQIEKEK +G D+S+YGSSKVVGTQAPVQLGSLRAADGKE
Sbjct:  275 VSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAADGKE 377
The following BLAST results are available for this feature:
BLAST of EY756731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME1_ORYSJ6.866e-4989.32GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI6.866e-4989.32GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME2_ORYSJ1.998e-4889.32GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME_ARATH7.592e-4888.35GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-A08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756731 ID=EY756731; Name=EY756731; organism=Citrus sinensis; type=EST; length=653bp
CCACGCGTCCGCATGAATGAGATGGCTGAGATTGTTCTTAGCTTTGAGGA
CAAGAAGCTACCTATCCACCACATTCCTGGCCCTGAGGGTGTCCGCGGTC
GTAATTCAGACAACACACTGATCAAAGAGAAGCTTGGTTGGGCACCATCA
ATGAAGTTGAAGGATGGGCTGAGAATTACATATTTCTGGATCAAGGAACA
GATTGAGAAGGAGAAGACTCAAGGTATTGACCTATCTGTTTATGGATCAT
CGAAGGTGGTAGGAACTCAAGCTCCAGTTCAGTTAGGCTCACTTCGTGCT
GCTGATGGCAAAGAATGAAGTGGTTGAGCCTCTTGTAGTTGCCCTCAGAA
AAGCCATGTTTTATTATGCTATTTCTAGCAATCATAATTCCATGTTGTCT
TATGATATAAAGCTATCACTATGAGTTAAAAATTTACTTGTGTGGAGATT
TAGGAACGCTTCGAGTTTGGACCATTCTTCAAATTGGTTTCTAGTCTGTA
CTATGCTGAAGTGTCTGGGAGAAGCTTTTGCACTCACATTGTATTTTACC
TAGCTTTTCAGTGGAGGCTGCTACAGTAGGATGATATAAGAGCATTTCCC
TTTTGTGTATTATTTGTCGGTTTGAAATAAAAATAATTTCAATTTTATTT
CCA
back to top