CX286824

Overview
NameCX286824
Unique NameCX286824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: WDR26_HUMAN (WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 3.982e-32
Identity = 71/158 (44.94%), Postives = 100/158 (63.29%), Query Frame = 1
Query:   13 LKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI-EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 483
            +++  L   SDGK ++       +   + E   +R I +ED  I SF++S++ +  L+N+  Q +HLW+++  V LV KY+G  +  + I SCFGG  + FIASGSED +VYIWH+ S   I  L GH+  VNCVSWNP  P M+ASASDD T+RIWG
Sbjct:  486 VRVQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDRV-LVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWG 642          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: WDR26_XENTR (WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 5.200e-32
Identity = 70/158 (44.30%), Postives = 100/158 (63.29%), Query Frame = 1
Query:   13 LKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI-EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 483
            +++  L   SDGK ++       +   + E   +R I +ED  I SF++SR+ +  L+N+  Q +HLW+++  V LV KY+G  +  + I SCFGG  + FIASGSED +VY+WH+ S   I  L GH+  VNCVSWNP  P ++ASASDD T+RIWG
Sbjct:  439 VRVQCLWCLSDGKTVLASDTHQRIRGYNFEDLTDRNIVQEDHPIMSFTISRNGRLALLNVATQGVHLWDLQDRV-LVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYVWHKRSELPIAELTGHTRTVNCVSWNPQIPSLMASASDDGTVRIWG 595          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: WDR26_MOUSE (WD repeat-containing protein 26 OS=Mus musculus GN=Wdr26 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 5.200e-32
Identity = 71/158 (44.94%), Postives = 100/158 (63.29%), Query Frame = 1
Query:   13 LKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI-EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 483
            +++  L   SDGK ++       +   + E   +R I +ED  I SF++S++ +  L+N+  Q +HLW+++  V LV KY+G  +  + I SCFGG  + FIASGSED +VYIWH+ S   I  L GH+  VNCVSWNP  P M+ASASDD T+RIWG
Sbjct:  466 VRVQCLWCLSDGKTVLASDTHQRVRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDRV-LVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWG 622          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: WDR26_DROME (WD repeat-containing protein 26 homolog OS=Drosophila melanogaster GN=CG7611 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 64/139 (46.04%), Postives = 91/139 (65.47%), Query Frame = 1
Query:  121 IEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLK----DLNVKRKDCHSN 525
            + E   I +FS++  ++  L+N+ NQ +HLW+IE +  LV +++G ++S F I SCFGG+ ++F+ASGSED  VYIWH    + +  L GH+  VNCVSWNP  P +LASASDD T+RIWG K        +  DC S+
Sbjct:  484 LREPHPIMTFSINSADRLALLNVSNQGLHLWDIEDKC-LVRRFQGIRQSNFAIHSCFGGVNESFVASGSEDKVVYIWHIKREEPLAKLAGHTKTVNCVSWNPVYPSLLASASDDATVRIWGPKPNGSSATTESDDCSSS 621          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: WDR26_DANRE (WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 68/158 (43.04%), Postives = 98/158 (62.03%), Query Frame = 1
Query:   13 LKISDLEVTSDGKQIITMCKESALLLLDREAKVERYI-EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWG 483
            +++  L    DG+ ++       +     E   +R I +ED  I SF++S++ +  L+N+  Q +HLW+++  V LV KY+G  +  + I SCFGG  + FIASGSED +VYIWH+ S   I  L GH+  VNCVSWNP  P ++ASASDD T+RIWG
Sbjct:  398 VRVQCLWCMGDGRTVLASDTHQRIRGYSFEDLTDRNIVQEDHPIMSFTVSKNGRLALLNVATQGVHLWDLQDRV-LVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYIWHKRSELPIVELTGHTRTVNCVSWNPCIPSLMASASDDGTVRIWG 554          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: YIPC_SCHPO (Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pombe GN=SPAC343.04c PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.381e-29
Identity = 66/168 (39.29%), Postives = 96/168 (57.14%), Query Frame = 1
Query:   13 LKISDLEVTSDGKQIITMCKESALLLLDREAKVE--------RYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKD 492
            + I D+ +TSDG ++  +  E  +   D+   +         + I     +TS  LS+D+K+ L NL      LW++E E ++V +Y GHK   F+I SCFGG +  F+ SGSED ++ IWHR S  L+  L GH   VN V++NP +P+  ASA DD T+RIW  KD
Sbjct:  336 VNIYDMALTSDGTKLYIVGFEQLINAEDKHIAIYSVETRECIKKISLQSKVTSICLSKDSKYALTNLEPHTTFLWDLE-ENRIVRQYMGHKLGNFLIGSCFGGKDDTFVLSGSEDDKIRIWHRESGKLLATLSGHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSNKD 502          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: GID7_YEAST (Glucose-induced degradation protein 7 OS=Saccharomyces cerevisiae GN=GID7 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.985e-15
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 1
Query:  154 LSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAV-----------NCVSWNPANPHMLASASDDRTIRIW 480
            +S     +LV+L + E+ +W+ +  + L+ KY G K+  F+IRSCF       + SGSED ++YIW R   +L+  L GHS  +           N V+ NPA+  M AS  DD  I+IW
Sbjct:  623 ISESQHLVLVSLQDNELQMWDYKENI-LIQKYFGQKQQHFIIRSCFA-YGNKLVMSGSEDGKIYIWDRIRGNLVSVLSGHSTVMSNSTKPMGKNCNVVASNPADKEMFASGGDDGKIKIW 740          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.423e-13
Identity = 40/121 (33.06%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  124 EEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDRTIRIW 480
            EE   IT    S + K++L + LN  + LW+ + +++++ +Y GH+ S++ + + F      +I SGSED +VYIW+  + +++  L GH+ AV C   +P   +++ASA+   D  I+IW
Sbjct:  273 EEHPPITHVKFSPNGKYILASNLNNTLKLWDYQ-KLRVLKEYTGHENSKYCVAANFSVTGGKWIVSGSEDHKVYIWNLQTREILQTLDGHNTAVMCTDCHPGQ-NIIASAALEPDMRIKIW 391          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.406e-13
Identity = 46/159 (28.93%), Postives = 85/159 (53.46%), Query Frame = 1
Query:   19 ISDLEVTSDGKQIITMCKESALLLLDREAK--VERYIEEDQTITSF-SLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASAS--DDRTIRIW 480
            +S +    DG  I++   +    + D  +   ++  I++D    SF   S + K++L   L+  + LW+   + K +  Y GHK  ++ I + F      +I SGSED+ VYIW+  S +++  L GH+  V C + +P   +++ASA+  +D+TI++W
Sbjct:  201 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTE-NIIASAALENDKTIKLW 357          
BLAST of CX286824 vs. ExPASy Swiss-Prot
Match: MORG1_DICDI (Mitogen-activated protein kinase organizer 1 homolog OS=Dictyostelium discoideum GN=morg1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 45/148 (30.41%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   37 TSDGKQIITMCKESALLLLDREAKVERYIEEDQTITSFSLSRDNKFLLVNLLNQEIHLWNIEGEVKLVAKYKGHKRSRFVIRSCFGGLEQAFIASGSEDSQVYIWHRASCDLIGALPGHSGAVNCVSWNPANPHMLASASDDRTIRIW 480
            T   K++IT   +  +   D         E+   I+S S+++D K  + +  ++ + L +I+   + + +YKGHK   + I SC    + + I SGSED+  YI+   S  L+  L GHS  +  V  +P+    + S S D TIRIW
Sbjct:  177 THTQKEVITSSVDGCIRTYDVRMGTLVTYEDTIPISSVSITKDKKCFIASCTDETVKLIDIDS-YETLKEYKGHKNKVYKINSC-SNFDDSLIISGSEDNDFYIYELLSGKLLSKLSGHSNIITHVDSHPSKNQFITS-STDCTIRIW 321          
The following BLAST results are available for this feature:
BLAST of CX286824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
WDR26_HUMAN3.982e-3244.94WD repeat-containing protein 26 OS=Homo sapiens GN... [more]
WDR26_XENTR5.200e-3244.30WD repeat-containing protein 26 OS=Xenopus tropica... [more]
WDR26_MOUSE5.200e-3244.94WD repeat-containing protein 26 OS=Mus musculus GN... [more]
WDR26_DROME9.807e-3146.04WD repeat-containing protein 26 homolog OS=Drosoph... [more]
WDR26_DANRE1.673e-3043.04WD repeat-containing protein 26 OS=Danio rerio GN=... [more]
YIPC_SCHPO5.381e-2939.29Uncharacterized WD repeat-containing protein C343.... [more]
GID7_YEAST1.985e-1536.67Glucose-induced degradation protein 7 OS=Saccharom... [more]
YZLL_CAEEL1.423e-1333.06Uncharacterized WD repeat-containing protein K04G1... [more]
WDS_DROME5.406e-1328.93Protein will die slowly OS=Drosophila melanogaster... [more]
MORG1_DICDI3.504e-1230.41Mitogen-activated protein kinase organizer 1 homol... [more]

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Properties
Property NameValue
Genbank descriptionC01001E01Rv Veg1 Citrus clementina cDNA clone C01001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286824 ID=CX286824; Name=CX286824; organism=Citrus clementina; type=EST; length=544bp
GGCCAACGAACTTTAAAGATTTCTGATTTGGAAGTAACGAGTGATGGGAA
GCAGATTATAACTATGTGTAAAGAATCTGCCCTACTATTATTGGACAGAG
AAGCAAAAGTTGAGAGGTACATTGAAGAGGATCAAACAATAACATCATTC
TCATTATCTAGAGACAACAAATTCTTGCTGGTGAATCTTCTGAACCAAGA
AATCCATCTTTGGAACATAGAGGGTGAAGTCAAGCTGGTTGCCAAGTACA
AAGGTCATAAACGTAGTCGTTTTGTTATTAGGTCTTGTTTTGGTGGGCTT
GAGCAAGCTTTTATTGCCAGTGGGAGTGAGGATTCACAGGTTTATATATG
GCATAGAGCCTCATGTGACCTCATTGGGGCATTACCGGGTCATTCTGGAG
CTGTTAACTGTGTGAGCTGGAATCCAGCAAATCCTCACATGTTGGCATCA
GCCAGTGATGACCGTACTATTCGGATATGGGGCTTGAAAGATCTAAATGT
GAAGCGGAAGGATTGTCACAGCAATGGCGTCCACTATTGCAATG
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