CX286893

Overview
NameCX286893
Unique NameCX286893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length588
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286893 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 5.798e-107
Identity = 183/195 (93.85%), Postives = 192/195 (98.46%), Query Frame = 2
Query:    2 AMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFK 586
            AMSALCEATGANV QV+++VGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVC+GLLGDKA LSIYDPQVTEDQIQRDL+MNKFDWDHP+HLQP SPTTVK+VSVVWDAYEATKDAHG+CILTEWDEFK
Sbjct:  232 AMSALCEATGANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILTEWDEFK 426          
BLAST of CX286893 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 1.687e-106
Identity = 182/195 (93.33%), Postives = 193/195 (98.97%), Query Frame = 2
Query:    2 AMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFK 586
            AMSALCEATGA+V+QV++AVGTDSRIGPKFLN+SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVV+SMFN+VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL DKARLSIYDPQVTEDQIQRDL+MNKFDWDHPLHLQPMSPTTVKQV+V WDAYEATKDAHG+CI+TEWDEFK
Sbjct:  232 AMSALCEATGADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMTEWDEFK 426          
BLAST of CX286893 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 6.000e-104
Identity = 175/195 (89.74%), Postives = 191/195 (97.95%), Query Frame = 2
Query:    2 AMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFK 586
            AMSALCE+TGA+V+QV++AVGTDSRIG KFLNASVGFGGSCFQKDILNLVYIC+CNGLPEVAEYWKQVIKINDYQK+RFVNR+V+SMFNTVSNKK+A+LGFAFKKDTGDTRETPAIDVCKGLLGDKA++SIYDPQVTE+QIQRDL+M KFDWDHPLHLQPMSPTTVKQVSV WDAYEATKDAH VC+LTEWDEFK
Sbjct:  232 AMSALCESTGADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVIKINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQISIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLTEWDEFK 426          
BLAST of CX286893 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.003e-58
Identity = 119/195 (61.03%), Postives = 145/195 (74.36%), Query Frame = 2
Query:    2 AMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQ-VSVVWDAYEATKDAHGVCILTEWDEF 583
            ++SA+CEATGA+VS+VA AVG DSRIG KFL ASVGFGGSCFQKDILNL+YICE   LPEVA YW+QVI +N+YQK RF  +++ S+FNTVS+K+IA+LGFAFKK+TGDTRET AI VC+ LL + A L IYDP+V  +QI  DLT       HP   +  SP  VK+ V +  D Y A +  H + I TEWDEF
Sbjct:  232 SLSAVCEATGADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVIDMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVCQTLLEEGAALDIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRATHALVICTEWDEF 417          
BLAST of CX286893 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.891e-57
Identity = 111/195 (56.92%), Postives = 144/195 (73.85%), Query Frame = 2
Query:    2 AMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFK 586
            ++SALCEATGA+V +VA A+GTD RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A+L IYDP+V ++QI  DL+      D+ +          + V++  D YEA   AH + I TEWD FK
Sbjct:  236 SISALCEATGADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLHIYDPKVPKEQIILDLSHPGVSEDNQVS---------RLVTISQDPYEACDGAHALVICTEWDMFK 421          
BLAST of CX286893 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.226e-56
Identity = 111/195 (56.92%), Postives = 140/195 (71.79%), Query Frame = 2
Query:    2 AMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFK 586
            ++SALCEATGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK
Sbjct:  236 SISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSKDDQV---------ARLVTISKDPYEACDGAHAVVICTEWDMFK 421          
BLAST of CX286893 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.601e-56
Identity = 111/195 (56.92%), Postives = 140/195 (71.79%), Query Frame = 2
Query:    2 AMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFK 586
            ++SALCEATGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK
Sbjct:  236 SISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTEWDMFK 421          
BLAST of CX286893 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.601e-56
Identity = 111/195 (56.92%), Postives = 140/195 (71.79%), Query Frame = 2
Query:    2 AMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFK 586
            ++SALCEATGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK
Sbjct:  236 SISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTEWDMFK 421          
BLAST of CX286893 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.567e-56
Identity = 110/195 (56.41%), Postives = 140/195 (71.79%), Query Frame = 2
Query:    2 AMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFK 586
            ++SALCEATGA+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH + I TEWD FK
Sbjct:  236 SISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTEWDMFK 421          
BLAST of CX286893 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.312e-55
Identity = 108/195 (55.38%), Postives = 139/195 (71.28%), Query Frame = 2
Query:    2 AMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFK 586
            ++SALCE+TGA+V +VA A+G D RIG KFL ASVGFGG CFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH + I TEWD FK
Sbjct:  236 SISALCESTGADVEEVATAIGMDQRIGNKFLKASVGFGGGCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTEWDMFK 421          
The following BLAST results are available for this feature:
BLAST of CX286893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
UGDH_SOYBN5.798e-10793.85UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH1_ARATH1.687e-10693.33Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH2_ARATH6.000e-10489.74Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH_DROME1.003e-5861.03UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_CHICK1.891e-5756.92UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_BOVIN1.226e-5656.92UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_PONAB1.601e-5656.92UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN1.601e-5656.92UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_MOUSE3.567e-5656.41UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_RAT2.312e-5555.38UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionC01002C07Rv Veg1 Citrus clementina cDNA clone C01002C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286893 ID=CX286893; Name=CX286893; organism=Citrus clementina; type=EST; length=588bp
TGCCATGTCAGCTCTCTGCGAGGCAACTGGAGCTAATGTCAGTCAGGTGG
CATTTGCTGTTGGTACAGACTCTAGGATTGGGCCCAAATTCTTGAATGCT
AGTGTTGGGTTCGGTGGCTCCTGCTTCCAGAAGGATATTTTGAATCTGGT
TTACATCTGCGAGTGCAATGGCCTTCCAGAGGTGGCTGAGTACTGGAAAC
AAGTCATTAAGATCAATGATTACCAGAAAAGCCGTTTTGTGAACCGCGTA
GTTGCCTCTATGTTCAACACGGTTTCAAACAAGAAGATTGCCGTTCTGGG
ATTTGCCTTCAAGAAGGATACCGGTGACACCAGAGAGACCCCAGCCATTG
ATGTCTGCAAGGGGCTTTTGGGAGACAAAGCTCGGTTGAGCATATACGAC
CCACAGGTCACCGAGGACCAGATCCAGAGGGACCTTACAATGAACAAGTT
TGACTGGGACCATCCTCTTCACCTCCAGCCAATGAGTCCCACCACGGTGA
AGCAAGTGAGCGTGGTCTGGGATGCCTATGAAGCAACAAAAGATGCCCAT
GGTGTCTGCATCTTGACCGAGTGGGATGAGTTCAAGAC
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