CX286909

Overview
NameCX286909
Unique NameCX286909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286909_ssr405 microsatellite CX286909_ssr405:405..425. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:20..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 62/170 (36.47%), Postives = 81/170 (47.65%), Query Frame = 2
Query:   32 MASLNEASTLELISQYLLADQYFTSSIDHTHSFKNISNLPQSPSLFNNPXXXXXXXXXXXXXDRDNINSRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            MA+  EA  ++ ISQ+LL D + +   DH             PSLF N               R   N   KP+STL QRKP  + N+++ +T                  V+ K +                 EE+HYRGVRRRPWG+YAAEIRDPN+KG R+WLGT+D
Sbjct:    1 MATKQEALAIDFISQHLLTD-FVSMETDH-------------PSLFTNQLHNFHSETGP----RTITNQSPKPNSTLNQRKPP-LPNLSVSRT------------------VSTKTEKEE--------------EERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYD 119          
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 66/200 (33.00%), Postives = 88/200 (44.00%), Query Frame = 2
Query:   32 MASLNEAST-LELISQYLLADQYF---------------------TSSIDHTHSFK---NISNLPQSPSL-----FNNPXXXXXXXXXXXXXDRDNINSRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            MAS  E ST L+LI Q+LL D  F                     + S+D + SF+   N +   QS +L     FNN              +     S +   ++ K+RKP+   N+ IP            V  +    V +                    E+KHYRGVR+RPWG++AAEIRDPNRKG+RVWLGTFD
Sbjct:    1 MASPQENSTTLDLIRQHLLDDNVFLEHYCSETETTTLIYSQSSSSSESLDQSFSFEPTLNYATTAQSSNLEVSTFFNNSKTEFDSFEFGTIPNVSAARSSSLKQTSFKERKPSL--NIAIP------------VKQEVVQKVELA-----------------PTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFD 169          
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 31/36 (86.11%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  434 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            E+KHYRGVR+RPWG++AAEIRDPNRKG+RVWLGTFD
Sbjct:  141 EKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFD 176          
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  245 KPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            +P    + RKP     +++P  T +   +  N   +   PV+ +                   E+KHYRGVR+RPWG++AAEIRDPN++GSRVWLGTFD
Sbjct:  110 EPELKSQIRKPPL--KISLPAKTEWIQFAAENTKPEVTKPVSEE-------------------EKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFD 187          
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  434 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            +++HYRGVRRRPWG+YAAEIRDPN+KG RVWLGTFD
Sbjct:   68 DQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFD 103          
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 28/36 (77.78%), Postives = 34/36 (94.44%), Query Frame = 2
Query:  434 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            E +HYRGVRRRPWG++AAEIRDP +KGSR+WLGTF+
Sbjct:  103 ETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFE 138          
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 27/37 (72.97%), Postives = 35/37 (94.59%), Query Frame = 2
Query:  431 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            ++ +HYRGVRRRPWG++AAEIRDP +KGSR+WLGTF+
Sbjct:  105 VDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFE 141          
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 54/187 (28.88%), Postives = 74/187 (39.57%), Query Frame = 2
Query:   32 MASLNEASTLELISQYLLAD--------------QYFTSSIDHTHSFKNISNLPQSPSLFNNPXXXXXXXXXXXXXDRDNIN---SRNKPSSTLKQRKPACVKNVTIPQTTSFNLMSCSNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            MA+ NE S L LI +YLL +                FTS       F      P+   L                    N +     N P  T++  +   +K +  P  T +   +  N   +   PV                      E++HYRGVR RPWG++AAEIRDP R+G+RVWLGTF+
Sbjct:    1 MATPNEVSALFLIKKYLLDELSPLPTTATTNRWMNDFTSFDQTGFEFSEFETKPEIIDLVTPKPEIFDFDVKSEIPSESNDSFTFQSNPPRVTVQSNRKPPLK-IAPPNRTKWIQFATGNPKPELPVPVVAAE------------------EKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFE 168          
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:  431 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            ++E HYRGVR+RPWGRYAAEIRDP +K SRVWLGTFD
Sbjct:   22 VKEVHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFD 57          
BLAST of CX286909 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2
Query:  431 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFD 541
            ++E HYRGVR+RPWGRYAAEIRDP +K SRVWLGTFD
Sbjct:   22 VKEVHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFD 57          
The following BLAST results are available for this feature:
BLAST of CX286909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
EF104_ARATH7.187e-1836.47Ethylene-responsive transcription factor ERF104 OS... [more]
ERF5_NICSY5.695e-1533.00Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_TOBAC1.074e-1386.11Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF102_ARATH1.074e-1339.39Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF105_ARATH2.393e-1383.33Ethylene-responsive transcription factor ERF105 OS... [more]
EF107_ARATH4.512e-1277.78Ethylene-responsive transcription factor ERF107 OS... [more]
EF106_ARATH4.512e-1272.97Ethylene-responsive transcription factor ERF106 OS... [more]
EF103_ARATH5.893e-1228.88Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF4_TOBAC2.239e-1181.08Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY2.239e-1181.08Ethylene-responsive transcription factor 4 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionC01002D11Rv Veg1 Citrus clementina cDNA clone C01002D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286909 ID=CX286909; Name=CX286909; organism=Citrus clementina; type=EST; length=542bp
ATTTCCATTTACATTTCATCTTACCTTCAATATGGCATCTCTGAATGAAG
CATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTC
ACTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCC
TCAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAA
CAGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCT
TCAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCAT
ACCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATG
ATGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCT
GATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAG
AGGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACC
CGAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATA
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