CX286912

Overview
NameCX286912
Unique NameCX286912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX286912 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.188e-19
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 2 
Query:  110 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPY 466
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPY
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPY 120
The following BLAST results are available for this feature:
BLAST of CX286912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.188e-1941.32Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
back to top
Properties
Property NameValue
Genbank descriptionC01002E02Rv Veg1 Citrus clementina cDNA clone C01002E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286912 ID=CX286912; Name=CX286912; organism=Citrus clementina; type=EST; length=467bp
GAACTTTCCAGTTAAAGCCAAAGAGTTCCGAACGGATCAAAGTTTTCTTG
TAGGAGAGAGAAATTTCTAGGGCGAGAAAGCGAGAGAAAAGGAAATTTGG
TAGCTTAAAATGTTGGGAGTGTTCAGCAGCGCGATCGTTTCACCTCCAGA
GGAGCTGGTGGCGGCCGGAAGCCGGACTCCGTCGCCGAAGACCACATCGA
CGGCACTGGTCGACCGTTTCCTCCAGACCAACTCGTCTGCTGTGTCCGTA
CAGGTCGGGGACAACGTCACCCTCGCGTACACTCATCAGAACGAGTCTCC
TTTACGGCAAAGATCATTTGCTGTGAAAGATGAGATCTTTTGCTTGTTTG
AGGGAGCACTTGATAACTTGGGAAGCCTGAGGCAGCAATATGGACTAGCT
AAGTCGGCAAATGAAGTGATCTTGGTGATTGAGGCATACAAGGCTCTGCG
TGATCGGGCCCCTTACC
back to top