CX286916

Overview
NameCX286916
Unique NameCX286916
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286916 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.570e-22
Identity = 56/114 (49.12%), Postives = 68/114 (59.65%), Query Frame = 3
Query:   39 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 380
            K K E  +     A  K+ A  KA + + K       A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP  KAVSAVGKA G KWK+++D              ++YEK M AYN
Sbjct:    5 KSKTESKRADPKLAVNKKGAATKARKPAGKG-----KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYN 113          
BLAST of CX286916 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.090e-22
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 3
Query:   57 VKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 380
            +K  + +A    K  +K   +  K+TK    A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT                +YEK + AYN
Sbjct:    1 MKGGKSKAKSDNKLAVKKQAADTKKTKK---AVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYN 105          
BLAST of CX286916 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.829e-19
Identity = 54/126 (42.86%), Postives = 70/126 (55.56%), Query Frame = 3
Query:    6 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 380
            MK  + KGA K D    VK                S+ + K  K  K  A KDPNKPKR PSAFFVF+EEFRK +K+++P  K+V+AVGKA G++WKSL++              L+Y K + AYN
Sbjct:    1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYN 110          
BLAST of CX286916 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.404e-18
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 3
Query:   69 EDRAAGKRKAVLKASRSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 380
            E + A  + AV K   ++ K  K     K  KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++               +YE  + AYN
Sbjct:    9 ESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYN 114          
BLAST of CX286916 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.968e-18
Identity = 52/125 (41.60%), Postives = 67/125 (53.60%), Query Frame = 3
Query:    6 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAYN 380
            MK  + KGA K D    VK     + G  K   K  +           A KDPNKPKR PSAFFVF+ EFR+ +KQ++P  K+V+AVGKA GE+WKSL++               +Y K + AYN
Sbjct:    1 MKGAKSKGAAKADAKLAVK-----SKGAEKPAAKGKKGK---------AGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYN 111          
The following BLAST results are available for this feature:
BLAST of CX286916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN3.570e-2249.12HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI6.090e-2248.15HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE2.829e-1942.86DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_VICFA1.404e-1846.23HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT6.968e-1841.60HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC01002E06Rv Veg1 Citrus clementina cDNA clone C01002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286916 ID=CX286916; Name=CX286916; organism=Citrus clementina; type=EST; length=604bp
TGAAAATGAAGGTTACCAGGGGCAAAGGAGCAGTCAAGAAGGACAAAAAT
GAAGTAGTGAAGCCTGTTGAGGACAGAGCTGCAGGAAAGCGAAAGGCTGT
GCTTAAAGCTAGTAGGAGTAGCAACAAGCGCACCAAGAATGTCAAGTCAG
CAAAGAAAGACCCTAACAAGCCGAAGAGGCCTCCTAGTGCTTTTTTTGTT
TTCCTAGAAGAGTTCAGAAAGGTTTACAAACAAGAGCATCCCAATGTTAA
AGCTGTCTCAGCTGTGGGGAAAGCTGGGGGAGAGAAATGGAAGTCGCTGA
CTGATGCAGAAAAAGCCCCATTTGAAGCAAAAGCAGCAAAAAGGAAATTG
GATTATGAAAAGCTGATGACAGCATACAACAAGAAACAGGAAAGTACTGA
AGATGAAGATGAAGAGGAGTCTGAGAAGTCAAAATCCGAGGTGCATGACG
ACGATGATGATGAAGAACTTGAAGAGGAGGATGAAGAGGAGGACGACGAC
TAGATTCAGGAGCGCCACTGGGTATAGTTCCTTTGCTTTATCCAGAAAAA
ATCCTGGACGTTGTATGACCATGCAGTTGGGTTATTTTGTGTTTTTAACT
ATAA
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