CX286935

Overview
NameCX286935
Unique NameCX286935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length275
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8083 contig Ccv1_Contig8083:103..377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286935 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.037e-12
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 2
Query:   20 RRFDESKVGVKGLADLGVTAIRRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSVVDSDDL-RPTIVDKIACASRELGFFPVVNHG 274
            + FDE+K GVKGL D G+T I   F  PPATL   +P S +      +PTIDL    +D + R ++V+KI  A+ + GFF V+NHG
Sbjct:   18 KAFDETKTGVKGLIDAGITEIPSIFRAPPATLTSPKPPSSS---DFSIPTIDLKGGGTDSITRRSLVEKIGDAAEKWGFFQVINHG 100          
BLAST of CX286935 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.571e-11
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 2
Query:   20 RRFDESKVGVKGLADLGVTAIRRFFIHPPATLADLRPKSKTRPVSDVVPTIDLSVVDSDDLR-PTIVDKIACASRELGFFPVVNHG 274
            + FD++K GVKGL D G+T + + F+ PP      + ++K      V P IDL  +D D ++   IVDK+  AS + GFF VVNHG
Sbjct:   17 KAFDDTKAGVKGLVDSGITKVPQIFVLPP------KDRAKKCETHFVFPVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHG 96          
BLAST of CX286935 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.358e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 2
Query:   20 RRFDESKVGVKGLADLGVTAIRRFFIHPPATLADLRPKSKTRPVSDVVPTIDL-SVVDSDDLRPTIVDKIACASRELGFFPVVNHG 274
            + FDE K+GVKGL D GVT + R F +P   +A+ +P S       ++PTIDL  V +S  +R ++V K+  A  + GFF  +NHG
Sbjct:   12 KAFDEMKIGVKGLVDAGVTKVPRIFHNPHVNVANPKPTSTV----VMIPTIDLGGVFESTVVRESVVAKVKDAMEKFGFFQAINHG 93          
BLAST of CX286935 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.386e-11
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 2
Query:   20 RRFDESKVGVKGLADLGVTAIRRFFIHPPATLADLRPKSKTRPVSDV-VPTIDLSVVDSD-DLRPTIVDKIACASRELGFFPVVNHG 274
            + FDE+K GVKG+ D G+T I R FI  P  L  +   S  R  SD+ +P I+L+ + S+ ++R  IV+KI  AS + GFF +VNHG
Sbjct:   46 KAFDETKAGVKGIVDTGITKIPRIFIDQPKNLDRI---SVCRGKSDIKIPVINLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHG 129          
The following BLAST results are available for this feature:
BLAST of CX286935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ACCH1_ARATH3.037e-1245.351-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_SOLLC2.571e-1141.861-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GSL_ARATH3.358e-1141.86Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
DV4H_CATRO4.386e-1144.83Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
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Properties
Property NameValue
Genbank descriptionC01002G03Rv Veg1 Citrus clementina cDNA clone C01002G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286935 ID=CX286935; Name=CX286935; organism=Citrus clementina; type=EST; length=275bp
CTCGTGCCGAATCGGCACGAGGCGATTCGACGAGTCCAAAGTCGGGGTCA
AAGGTCTAGCTGACTTGGGCGTCACCGCCATCCGCCGCTTTTTCATCCAC
CCACCCGCCACTCTTGCCGATCTGAGACCCAAGTCAAAGACCCGGCCCGT
CTCTGATGTAGTCCCTACCATCGATTTATCGGTCGTTGACTCGGACGATC
TGCGGCCGACGATTGTGGATAAGATAGCATGTGCCTCGCGGGAGCTGGGG
TTCTTTCCGGTTGTGAATCACGGCA
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