CX286938

Overview
NameCX286938
Unique NameCX286938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:53..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 3.260e-83
Identity = 148/194 (76.29%), Postives = 167/194 (86.08%), Query Frame = 1
Query:    1 GKGGMSQGE---KEDGEEVNMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            GKGG S+     KE GEE NMAAWL+G+ TLKIQP  LPSLGPYDV VR+KAVG+CGSDVH  KT+R A+F+VK+PMVIGHECAG+IE+VGSEVK LV GDRVALEPGISC +C  C+ G+YNLC E K  GSPP +G LANQVVHP++LCFKLPDNVSLEEGAMCEPLSVG+HACRRAN+GPETNVLIMGSGP
Sbjct:    2 GKGGNSEDAVSGKEHGEE-NMAAWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGP 194          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: DHSO_MOUSE (Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 2.440e-46
Identity = 88/175 (50.29%), Postives = 120/175 (68.57%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            N++  + G   ++++   +P LGP DVL++M +VG+CGSDVH+ +  R+ DFVVK+PMV+GHE AG + KVG  VK L PGDRVA+EPG+     +YCK GRYNL P      +PP  G L     H AD C+KLPD+V+ EEGA+ EPLSVG++ACRR ++     VL+ G+GP
Sbjct:    9 NLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGELVKHLKPGDRVAIEPGVPREVDEYCKIGRYNLTPTIFFCATPPDDGNLCRFYKHNADFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLVCGAGP 183          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: DHSO_RAT (Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4)

HSP 1 Score: 183.726 bits (465), Expect = 5.436e-46
Identity = 87/175 (49.71%), Postives = 120/175 (68.57%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            N++  + G   ++++   +P LGP DVL++M +VG+CGSDVH+ +  R+ DFVVK+PMV+GHE AG + KVG  VK L PGDRVA+EPG+     ++CK GRYNL P      +PP  G L     H AD C+KLPD+V+ EEGA+ EPLSVG++ACRR ++     VL+ G+GP
Sbjct:    9 NLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGPMVKHLKPGDRVAIEPGVPREIDEFCKIGRYNLTPSIFFCATPPDDGNLCRFYKHSADFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLVCGAGP 183          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: DHSO_MACFA (Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 5.436e-46
Identity = 87/175 (49.71%), Postives = 119/175 (68.00%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            N++  + G   L+++   +P  GP +VL+RM +VG+CGSDVH+ +  R+ +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG+     ++CK GRYNL P      +PP  G L     H A  C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GP
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEEGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGVPRENDEFCKSGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHRVLVCGAGP 183          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: DHSO_PONAB (Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.066e-45
Identity = 88/175 (50.29%), Postives = 118/175 (67.43%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            N++  + G   L+++   +P  GP +VL+RM +VG+CGSDVH+ +  R+ +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A  C+KLPDNV+ EEGAM EPLSVG+HACRR  +     VL+ G+GP
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEDGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGAPRENDEFCKIGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGAMIEPLSVGIHACRRGGVTLGHKVLVCGAGP 183          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: DHSO_HUMAN (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 2.066e-45
Identity = 87/175 (49.71%), Postives = 118/175 (67.43%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            N++  + G   L+++   +P  GP +VL+RM +VG+CGSDVH+ +  R+ +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A  C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GP
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGP 183          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: DHSO_BOVIN (Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 6.010e-45
Identity = 87/175 (49.71%), Postives = 119/175 (68.00%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            N++  + G   L+++   +P  GP +VL++M +VG+CGSDVH+ +  R+ DFVVK+PMV+GHE +G + KVGS V+ L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A+ C+KLPDNV+ EEGA+ EPLSVG+HACRRA +     VL+ G+GP
Sbjct:    8 NLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIEPGAPRETDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGP 182          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: DHSO_SHEEP (Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.679e-44
Identity = 86/175 (49.14%), Postives = 119/175 (68.00%), Query Frame = 1
Query:   49 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            N++  + G   L+++   +P  GP +VL++M +VG+CGSDVH+ +  R+ DFVVK+PMV+GHE +G + KVGS V+ L PGDRVA++PG      ++CK GRYNL P      +PP  G L     H A+ C+KLPDNV+ EEGA+ EPLSVG+HACRRA +     VL+ G+GP
Sbjct:    7 NLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQG-RIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGP 180          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: DHSO_BACSU (Sorbitol dehydrogenase OS=Bacillus subtilis GN=gutB PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 1.253e-42
Identity = 77/173 (44.51%), Postives = 113/173 (65.32%), Query Frame = 1
Query:   55 AAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP 573
            AA +     +KI+ L +P +   +VL+++ AVG+CGSD+H+    R+ ++VV++P ++GHECAG I  VGS V     GDRVA+EPG++C +C+ CK GRYNLCP+ + L +PPV G     +    D  F +PD++S EE A+ EP SVG+HA  R  + P + + IMG GP
Sbjct:   11 AAVMHNTREIKIETLPVPDINHDEVLIKVMAVGICGSDLHYYTNGRIGNYVVEKPFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGVTCGRCEACKEGRYNLCPDVQFLATPPVDGAFVQYIKMRQDFVFLIPDSLSYEEAALIEPFSVGIHAAARTKLQPGSTIAIMGMGP 183          
BLAST of CX286938 vs. ExPASy Swiss-Prot
Match: DHSO_SCHPO (Putative sorbitol dehydrogenase OS=Schizosaccharomyces pombe GN=tms1 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.457e-40
Identity = 75/150 (50.00%), Postives = 100/150 (66.67%), Query Frame = 1
Query:  121 YDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSG 570
            + V V +KA G+CGSDVH+ K   + DF++K+PM++GHE AGV+ +VG  V +L PGD VA+EPG  C  CDYC+ GRYNLCP  +   +PP  G L    +   D C KLP  +S+EEGA+ EP+SV VHA  R N+   + VL+MG G
Sbjct:   30 HQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATPPYDGTLRTYYITTEDFCTKLPKQISVEEGALFEPMSVAVHAMTRGNLKCGSRVLVMGCG 179          
The following BLAST results are available for this feature:
BLAST of CX286938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
IDND_VITVI3.260e-8376.29L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
DHSO_MOUSE2.440e-4650.29Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=... [more]
DHSO_RAT5.436e-4649.71Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sor... [more]
DHSO_MACFA5.436e-4649.71Sorbitol dehydrogenase OS=Macaca fascicularis GN=S... [more]
DHSO_PONAB2.066e-4550.29Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=... [more]
DHSO_HUMAN2.066e-4549.71Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
DHSO_BOVIN6.010e-4549.71Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 ... [more]
DHSO_SHEEP8.679e-4449.14Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 ... [more]
DHSO_BACSU1.253e-4244.51Sorbitol dehydrogenase OS=Bacillus subtilis GN=gut... [more]
DHSO_SCHPO4.457e-4050.00Putative sorbitol dehydrogenase OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC01002G06Rv Veg1 Citrus clementina cDNA clone C01002G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286938 ID=CX286938; Name=CX286938; organism=Citrus clementina; type=EST; length=573bp
GGCAAGGGAGGGATGTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAA
CATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGG
AGCTTCCTTCTCTGGGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTT
GGTGTTTGTGGAAGTGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGA
TTTTGTAGTGAAAGAGCCTATGGTGATTGGGCATGAGTGTGCTGGGGTCA
TAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTG
GCCCTGGAACCAGGGATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGG
TCGATACAACTTGTGTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTC
ATGGTTGTCTGGCTAATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAG
CTGCCCGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAG
TGTTGGTGTTCATGCCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATG
TGCTTATCATGGGATCAGGGCCC
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