CX287001

Overview
NameCX287001
Unique NameCX287001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287001 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROAN (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila ananassae GN=GF15731 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = -1
Query:  281 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 451
            K  + +GA+E++TRG GSK+M KMG++ G GLG D +GIV P++A  LPK R L AC
Sbjct:  299 KPTEKLGAWEEYTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPKGRSLDAC 355          
BLAST of CX287001 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROMO (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila mojavensis GN=GI17578 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.813e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = -1
Query:  281 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 451
            K  + +GA+E++TRG GSK+MA MG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  298 KPTERLGAWEQYTRGIGSKLMANMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 354          
BLAST of CX287001 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROGR (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila grimshawi GN=GH11061 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.813e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = -1
Query:  281 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 451
            K  + +GA+E++TRG GSK+MA MG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  301 KPTEKLGAWEQYTRGIGSKLMANMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 357          
BLAST of CX287001 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROVI (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila virilis GN=GJ17921 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.092e-11
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = -1
Query:  281 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 451
            K  + +GA+E++TRG GSK+MA MG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  297 KPNERLGAWEQYTRGIGSKLMASMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 353          
BLAST of CX287001 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROYA (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila yakuba GN=GE18884 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = -1
Query:  281 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 451
            K  + +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356          
BLAST of CX287001 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROME (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila melanogaster GN=CG4709 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = -1
Query:  281 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 451
            K  + +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356          
BLAST of CX287001 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROER (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila erecta GN=GG10072 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = -1
Query:  281 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 451
            K  + +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356          
BLAST of CX287001 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROPS (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila pseudoobscura pseudoobscura GN=GA18374 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = -1
Query:  281 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 451
            K  + +GA+E++TRG GSK+M KMG++ G GLG + +GIV P++A  LP+ R L AC
Sbjct:  298 KPTEKLGAWEQYTRGIGSKLMEKMGYIHGTGLGSEGRGIVTPVSAQILPQGRSLDAC 354          
BLAST of CX287001 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROPE (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila persimilis GN=GL18949 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = -1
Query:  281 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 451
            K  + +GA+E++TRG GSK+M KMG++ G GLG + +GIV P++A  LP+ R L AC
Sbjct:  298 KPTEKLGAWEQYTRGIGSKLMEKMGYIHGTGLGSEGRGIVTPVSAQILPQGRSLDAC 354          
BLAST of CX287001 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROSI (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila simulans GN=GD23643 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = -1
Query:  281 KGAQNIGAFEKHTRGFGSKMMAKMGFVEGMGLGRDSQGIVNPLAAVRLPKSRGLGAC 451
            K    +GA+E+ TRG GSK+M KMG++ G GLG D +GIV P++A  LP+ R L AC
Sbjct:  300 KPTDRLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDAC 356          
The following BLAST results are available for this feature:
BLAST of CX287001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ZGPAT_DROAN6.230e-1254.39Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROMO1.813e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROGR1.813e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROVI3.092e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROYA4.038e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROME4.038e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROER4.038e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROPS5.274e-1150.88Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROPE5.274e-1150.88Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROSI6.888e-1152.63Zinc finger CCCH-type with G patch domain-containi... [more]
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Properties
Property NameValue
Genbank descriptionC01003E03SK Veg1 Citrus clementina cDNA clone C01003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287001 ID=CX287001; Name=CX287001; organism=Citrus clementina; type=EST; length=553bp
GAGTTTTTTTTTTTTTTTTTTTTTGCGGATTCACATATTTTTATGAATTT
ACAGAAATAAATCCATATACAATCCACCCATTGCGGATTATCATATGTTC
AATTCAATCCAACCCACCAATCCGTAGATTAAATTTTTACGGATAAAATG
AATTGAACGAATCGAATTGAATTTTAAATACCCCTAGAAATAATGGACGT
ACGAAATGTTCAATTCCAATAGATTATAAGGTACACCACCTTACCCTTTT
CTGCTACTTCAATAACCATAACATCTAACTACAGGCGCCCAAGCCTCGTG
ATTTGGGTAGCCTGACAGCAGCCAAGGGGTTGACAATGCCTTGGGAATCT
CTGCCCAAGCCCATGCCTTCAACAAAGCCCATCTTTGCCATCATCTTTGA
TCCAAAACCTCTGGTGTGCTTTTCAAAAGCTCCAATGTTTTGAGCTCCCT
TCTTCGCCGAGTTACTGCGAGATTCCTTCCTCGCCGAGTCACTGCGAGAT
TCCTTTCTTGACGAGTCATCATCAGTGTTGGAAAATTCCACACCCAGCCC
AAG
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