CX287104

Overview
NameCX287104
Unique NameCX287104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TIM17_ARATH (Mitochondrial import inner membrane translocase subunit Tim17 OS=Arabidopsis thaliana GN=TIM17 PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 3.172e-62
Identity = 116/145 (80.00%), Postives = 122/145 (84.14%), Query Frame = 3
Query:  135 MGTPETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGARLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSAPQNMPM 569
            MGTPETSREPCPDRILDD               HF+KGTYNSP G+R  GGTQ+V MNAPR GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQG G+ASRSA+FGGVLLALIEGAGIMLNKVL+ PQNM M
Sbjct:    1 MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKGSRFVGGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVLLALIEGAGIMLNKVLAQPQNMMM 145          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TI17A_MOUSE (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Mus musculus GN=Timm17a PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.698e-31
Identity = 72/137 (52.55%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  147 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSA 551
            E +REPCP RI+DD                  KG  NSP G   RL G   A++  AP++GGSFAVWGGLFST DC+MV +R KEDPWNSI +GA TG  L+ R G  +   SA  GG+LLALIEGAGI+L +  SA
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFASA 139          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TI17A_RAT (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Rattus norvegicus GN=Timm17a PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.896e-31
Identity = 72/137 (52.55%), Postives = 85/137 (62.04%), Query Frame = 3
Query:  147 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSA 551
            E +REPCP RI+DD                  KG  NSP G   RL G   A++  AP++GGSFAVWGGLFST DC MV +R KEDPWNSI +GA TG  L+ R G  +   SA  GG+LLALIEGAGI+L +  SA
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFASA 139          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TI17A_DROME (Probable mitochondrial import inner membrane translocase subunit Tim17 1 OS=Drosophila melanogaster GN=Tim17b1 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.782e-31
Identity = 70/132 (53.03%), Postives = 85/132 (64.39%), Query Frame = 3
Query:  147 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLN 536
            E  REPCP RI++D                 +KG  N+PSG   RLSGG  AVR  +  VGG+FAVWG  FS  DC++VY R+KEDPWN+II+GA TGG L+ R GL S   SAL GG LLALIEG GI+++
Sbjct:    3 EYGREPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGGALLALIEGVGIVVS 134          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TI17A_HUMAN (Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens GN=TIMM17A PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.940e-31
Identity = 71/137 (51.82%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  147 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSA 551
            E +REPCP RI+DD                 +KG  NSP G   RL G   A++  AP++GGSFAVWGGLFS  DC+MV +R KEDPWNSI +GA TG  L+ R G  +   SA  GG+LLALIEGAGI+L +  SA
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFASA 139          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TI17B_HUMAN (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.451e-31
Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  147 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNK 539
            E +REPCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  +   SA+ GG+LLALIEG GI+L +
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTR 135          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TI17B_MOUSE (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30
Identity = 69/133 (51.88%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  147 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNK 539
            E +REPCP RI+DD                 +KG  N+P G R    G   AVR+ AP++GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R G  +   SA+ GG+LLALIEG GI+L +
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTR 135          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TI17B_BOVIN (Mitochondrial import inner membrane translocase subunit Tim17-B OS=Bos taurus GN=TIMM17B PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.133e-30
Identity = 69/133 (51.88%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  147 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNK 539
            E +REPCP RI+DD                 +KG  N+P G R  L G   AVR+ AP++GGSFAVWGGLFST DC +V LR KEDPWNSI +GA TG  L+ R    +   SA+ GG+LLALIEG GI+L +
Sbjct:    3 EYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSVPLAMVGSAMMGGILLALIEGVGILLTR 135          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TI17C_DROME (Probable mitochondrial import inner membrane translocase subunit Tim17 3 OS=Drosophila melanogaster GN=Tim17a1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.540e-29
Identity = 64/137 (46.72%), Postives = 87/137 (63.50%), Query Frame = 3
Query:  147 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGA--RLSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAGIMLNKVLSA 551
            E +R+PCP RI++D                FLKG  N+P+G   RL GG   V+M  P + GSFAVWG  FST DC +V+ RQ+ED WNSI++GAATGG L+ R G+ + + SAL G ++LA+IEGAG  +  + +A
Sbjct:    2 EYNRQPCPIRIVEDCGCAFMMGTIGGSLFEFLKGFRNAPTGLQRRLYGGIDLVKMRTPSIAGSFAVWGATFSTVDCALVHYRQREDAWNSILSGAATGGILAARNGIRAMANSALVGCLVLAMIEGAGAAVATINAA 138          
BLAST of CX287104 vs. ExPASy Swiss-Prot
Match: TI17D_DROME (Probable mitochondrial import inner membrane translocase subunit Tim17 4 OS=Drosophila melanogaster GN=Tim17a2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.757e-28
Identity = 60/128 (46.88%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  147 ETSREPCPDRILDDXXXXXXXXXXXXXXXHFLKGTYNSPSGAR--LSGGTQAVRMNAPRVGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGLGSASRSALFGGVLLALIEGAG 524
            E +R+PCP RI++D                +LKG  N+PSG R  L GG ++VR+  P + GSFA+WG  FST DC MV  RQ+ED WN+I++GAATGG L+ R G+ + + SA  G ++LA++EGAG
Sbjct:    2 EYNRQPCPIRIVEDCGCAFMMGTMGGSLFQYLKGFRNAPSGLRRGLHGGIESVRLRTPAIAGSFAIWGATFSTVDCVMVSYRQREDSWNAIVSGAATGGILAARNGIRAMANSAFVGCLVLAMLEGAG 129          
The following BLAST results are available for this feature:
BLAST of CX287104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TIM17_ARATH3.172e-6280.00Mitochondrial import inner membrane translocase su... [more]
TI17A_MOUSE1.698e-3152.55Mitochondrial import inner membrane translocase su... [more]
TI17A_RAT2.896e-3152.55Mitochondrial import inner membrane translocase su... [more]
TI17A_DROME3.782e-3153.03Probable mitochondrial import inner membrane trans... [more]
TI17A_HUMAN4.940e-3151.82Mitochondrial import inner membrane translocase su... [more]
TI17B_HUMAN6.451e-3152.63Mitochondrial import inner membrane translocase su... [more]
TI17B_MOUSE2.452e-3051.88Mitochondrial import inner membrane translocase su... [more]
TI17B_BOVIN7.133e-3051.88Mitochondrial import inner membrane translocase su... [more]
TI17C_DROME3.540e-2946.72Probable mitochondrial import inner membrane trans... [more]
TI17D_DROME1.757e-2846.88Probable mitochondrial import inner membrane trans... [more]

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Properties
Property NameValue
Genbank descriptionC01004G04SK Veg1 Citrus clementina cDNA clone C01004G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287104 ID=CX287104; Name=CX287104; organism=Citrus clementina; type=EST; length=576bp
CGAGGCTCCAGCACTGTTTCCACGCTGCATTCACTTTGTCCGATCAGGCT
GTGATTTTCTTACGGGCTTTGGGTATTGCTTGCGGGGAGATAGGTGCGTT
GGAGTGCTAGATTTATCTCCTTTTTACGACATCTATGGGAACCCCTGAAA
CTTCTCGAGAGCCTTGCCCTGACCGTATTCTTGATGATGTTGGTGGTGCA
TTCGGAATGGGTGCGGTTGGAGGTGCCGCATTCCACTTCTTGAAAGGCAC
ATATAATTCCCCGTCAGGTGCACGTTTAAGTGGAGGAACTCAAGCAGTAC
GTATGAATGCCCCTCGAGTTGGCGGCAGTTTTGCTGTGTGGGGCGGCCTC
TTCTCTACTTTTGATTGCACAATGGTGTATCTCCGACAAAAGGAAGACCC
ATGGAACTCAATTATAGCTGGTGCTGCCACTGGGGGGTTTCTTTCAATGC
GGCAAGGGTTGGGTTCTGCTTCCAGGTCGGCTTTGTTTGGTGGGGTCTTG
CTTGCTTTGATTGAAGGAGCTGGGATCATGTTAAATAAGGTTCTCAGTGC
ACCGCAGAATATGCCTATGATGGAAG
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