CX287171

Overview
NameCX287171
Unique NameCX287171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287171 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.466e-78
Identity = 143/224 (63.84%), Postives = 179/224 (79.91%), Query Frame = 2
Query:    8 QDHLGWKVGFGVPAILMVLSVLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASW-CYHRQKDSLLIVPTSKLRFLNKACLIRSPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSMDRHVT---SSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVV 667
            Q+HLGWK+GFGVPA+LM+++ LLF +ASPLYV    + SL TG AQ  V AYK RKL+LP  + S+ CY+  KDS +  P+ KLRFLNKACLI + E++I  DG ALNPW LCT ++VEELKALIKV+P+WSTGIMMSIN SQ+SF LLQA+SMDR ++   SSFQ+PAGSFG FTII LA WV+LYDR +IP+ASK++G+P RL VKLRMG+GLF+S + M +
Sbjct:  208 QEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAI 431          
BLAST of CX287171 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.314e-33
Identity = 79/224 (35.27%), Postives = 122/224 (54.46%), Query Frame = 2
Query:    8 QDHLGWKVGFGVPAILMVLSVLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKL------RFLNKACLIRSPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGM 661
            Q++ GW +GFG+P + M L++  FF  +PLY   K   S +T  +QV V +++   + +P  +A+  Y  Q  +  I  + K+      ++L+KA +I   E   +  G   N W LCT+ QVEELK LI++ P+W++GI+ S   +Q S   +Q          SFQ+P  + GTF   ++  WV LYDR ++P+A K  G         RMGIGLF+S + M
Sbjct:  223 QENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPE-DATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEE---SKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCM 442          
BLAST of CX287171 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.884e-32
Identity = 80/226 (35.40%), Postives = 126/226 (55.75%), Query Frame = 2
Query:    8 QDHLGWKVGFGVPAILMVLSVLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKD------SLLIVPTSKLRFLNKACLIRSPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMV 664
            Q ++GW  GFGVP + MV++V  FF  S  Y   +   S LT   QV V A++   + +P  + S  +    D      S  +V T  L+F +KA +    + D   DG  +NPW LC++ QVEELK++I +LP+W+TGI+ +   SQ ++  +LQ ++MD+H+  +F+IP+ S   F  +++  W  +YD+ +IP+A K            RMGIGL +S   M+
Sbjct:  205 QMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPE-DKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAV--ESQSDSIKDGE-VNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMI 426          
BLAST of CX287171 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.380e-30
Identity = 78/226 (34.51%), Postives = 122/226 (53.98%), Query Frame = 2
Query:    8 QDHLGWKVGFGVPAILMVLSVLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHRQKDSLLIVPTSKLR------FLNKACLIRSPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMV 664
            Q ++GW  G GVP + M ++V+ FF  S  Y   K   S LT   QV V + +  K+ +P  + S  Y  Q     I+ + KL       F +KA +    +   A   S+   W LCT+ QVEELKALI++LP+W+TGI+ +   SQ  +  +LQ +++D+H+  +F+IP+ S   F  +++  W  +YD++++P A K  G         R+GIGL +S   MV
Sbjct:  205 QMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPE-DESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKGAAKSSS---WKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMV 426          
BLAST of CX287171 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26
Identity = 71/228 (31.14%), Postives = 120/228 (52.63%), Query Frame = 2
Query:    8 QDHLGWKVGFGVPAILMVLSVLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYHR-------QKDSLLIVPTSKLRFLNKACLIRSPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVV 667
            QD++GW +G+G+P + + +S+ +F + +P Y     + S  T  A+V V ++  RK   P  +    +H        +K +  I PT  LRFL++A L               + W+LCT  +VEE K ++++LP+     + S+ ++Q N+  + Q +++DR VT SF IP  S   F  +++   +VLYDRV + +  K  G P  + +  RMGIGL    + M+V
Sbjct:  212 QDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVASF--RKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDRASLKTGTN----------HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIV 427          
BLAST of CX287171 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.761e-23
Identity = 69/231 (29.87%), Postives = 117/231 (50.65%), Query Frame = 2
Query:    8 QDHLGWKVGFGVPAILMVLSVLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKN----------RKLALPPPNASWCYHRQKDSLLIVPTSKLRFLNKACLIRSPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMMSINISQ-NSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVV 667
            QD++GW +G+G+  + +  S+ +F + + LY       S  T  A+V V + +           R   LPP       +  K +  I  TS LRFLN+A L             + + W LCTI +VEE K ++K+LP+     + S+ ++Q  +  + Q +++DR +T++F IP  S   FT  ++   +V+YDRV +    K+ G P  + +  RMGIG+ L  + M++
Sbjct:  212 QDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPME-----YASKRAFPIHSTSSLRFLNRASL----------KTGSTHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILIMII 427          
BLAST of CX287171 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.299e-23
Identity = 72/230 (31.30%), Postives = 118/230 (51.30%), Query Frame = 2
Query:    8 QDHLGWKVGFGVPAILMVLSVLLFFIASPLYVKLKASSSLLTGFAQVAVVAYKNRKLALPPPNASWCYH---------RQKDSLLIVPTSKLRFLNKACLIRSPEQDIAPDGSALNPWSLCTIEQVEELKALIKVLPLWSTGIMM-SINISQNSFPLLQASSMDRHVTSSFQIPAGSFGTFTIITLAAWVVLYDRVLIPVASKMKGKPVRLGVKLRMGIGLFLSCMGMVV 667
            QD +G K G+G+ A  +VL++ +F   +  Y   K   S +T  A V V A++NRKL LP  + S+ Y            K    +  T + R L+KA +    +Q+     +  N W+L T+  VEE+K ++++LP+W+T I+  +++    +  + Q+ ++DR +  SF+IP  S   F +  L     +YDRV I +  K+   P  L    R+G+GLF   M M V
Sbjct:  212 QDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNRKLELPA-DPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAI---RDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSI-GSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAV 436          
The following BLAST results are available for this feature:
BLAST of CX287171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PTR2X_ARATH1.466e-7863.84Probable peptide transporter At1g52190 OS=Arabidop... [more]
PTR2_ARATH9.314e-3335.27Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH7.884e-3235.40Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH7.380e-3034.51Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR3A_ARATH1.701e-2631.14Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR3B_ARATH1.761e-2329.87Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
CHL1_ARATH2.299e-2331.30Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC01005E02SK Veg1 Citrus clementina cDNA clone C01005E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287171 ID=CX287171; Name=CX287171; organism=Citrus clementina; type=EST; length=667bp
CACGAGGCAAGATCATCTTGGATGGAAAGTTGGATTCGGAGTTCCTGCAA
TCCTTATGGTGTTGTCTGTTTTACTGTTCTTCATTGCTTCTCCCTTGTAT
GTCAAGCTGAAAGCAAGCAGTAGCTTATTAACTGGCTTTGCACAAGTTGC
AGTTGTTGCTTACAAGAACAGAAAACTTGCCCTGCCACCGCCAAATGCTA
GTTGGTGTTACCATCGCCAGAAGGACTCTCTGCTCATTGTGCCAACTAGC
AAATTGCGGTTTTTGAATAAAGCTTGCCTCATTAGAAGTCCAGAACAAGA
CATTGCTCCAGATGGATCAGCTTTAAATCCATGGAGTCTTTGCACGATTG
AGCAAGTAGAAGAGCTCAAAGCACTCATTAAGGTCTTGCCATTGTGGTCC
ACGGGGATAATGATGTCGATCAACATTAGCCAAAACTCATTTCCATTGCT
GCAAGCTAGTTCCATGGATCGACATGTTACTTCAAGCTTCCAGATTCCCG
CAGGCTCTTTCGGCACATTCACAATAATTACTTTAGCAGCATGGGTAGTC
CTCTACGATCGTGTTTTAATTCCAGTGGCATCAAAGATGAAGGGTAAACC
AGTGAGGCTTGGTGTTAAACTAAGAATGGGAATTGGACTATTTCTCTCGT
GCATGGGAATGGTAGTT
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